Difference between revisions of "2.7.11.30-RXN"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8311 RXN-8311] == * direction: ** left-to-right * common-name: ** 1-18:3-2-18:2-digalactosyldia...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=THYMIDYLATESYN-RXN THYMIDYLATESYN-RXN] == * direction: ** left-to-right * common-name: ** thymidyla...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN- | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=THYMIDYLATESYN-RXN THYMIDYLATESYN-RXN] == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** thymidylate synthase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/1. | + | ** [http://enzyme.expasy.org/EC/2.1.1.45 ec-2.1.1.45] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[DUMP]][c] '''+''' 1 [[METHYLENE-THF-GLU-N]][c] '''=>''' 1 [[DIHYDROFOLATE-GLU-N]][c] '''+''' 1 [[TMP]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ19601]] |
− | |||
− | |||
− | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7187 PWY-7187] |
− | ** ''' | + | ** '''6''' reactions found over '''7''' reactions in the full pathway |
+ | * [[PWY-7199]], pyrimidine deoxyribonucleosides salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7199 PWY-7199] | ||
+ | ** '''2''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7198 PWY-7198] | ||
+ | ** '''6''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[1CMET2-PWY]], N10-formyl-tetrahydrofolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=1CMET2-PWY 1CMET2-PWY] | ||
+ | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184] | ||
+ | ** '''9''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-3841]], folate transformations II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3841 PWY-3841] | ||
+ | ** '''9''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210] | ||
+ | ** '''8''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166] | ||
+ | ** '''14''' reactions found over '''13''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12105 12105] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R02101 R02101] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P19368 P19368] | ||
+ | ** [http://www.uniprot.org/uniprot/Q07422 Q07422] | ||
+ | ** [http://www.uniprot.org/uniprot/P47469 P47469] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JT57 Q9JT57] | ||
+ | ** [http://www.uniprot.org/uniprot/P42326 P42326] | ||
+ | ** [http://www.uniprot.org/uniprot/O02604 O02604] | ||
+ | ** [http://www.uniprot.org/uniprot/P07382 P07382] | ||
+ | ** [http://www.uniprot.org/uniprot/P16126 P16126] | ||
+ | ** [http://www.uniprot.org/uniprot/P13922 P13922] | ||
+ | ** [http://www.uniprot.org/uniprot/P20712 P20712] | ||
+ | ** [http://www.uniprot.org/uniprot/P11044 P11044] | ||
+ | ** [http://www.uniprot.org/uniprot/P45350 P45350] | ||
+ | ** [http://www.uniprot.org/uniprot/P45352 P45352] | ||
+ | ** [http://www.uniprot.org/uniprot/P51820 P51820] | ||
+ | ** [http://www.uniprot.org/uniprot/P0C0M4 P0C0M4] | ||
+ | ** [http://www.uniprot.org/uniprot/Q27828 Q27828] | ||
+ | ** [http://www.uniprot.org/uniprot/P09249 P09249] | ||
+ | ** [http://www.uniprot.org/uniprot/P12462 P12462] | ||
+ | ** [http://www.uniprot.org/uniprot/P07606 P07606] | ||
+ | ** [http://www.uniprot.org/uniprot/P00471 P00471] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A884 P0A884] | ||
+ | ** [http://www.uniprot.org/uniprot/P00469 P00469] | ||
+ | ** [http://www.uniprot.org/uniprot/O81395 O81395] | ||
+ | ** [http://www.uniprot.org/uniprot/Q05763 Q05763] | ||
+ | ** [http://www.uniprot.org/uniprot/Q39687 Q39687] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9YTJ6 Q9YTJ6] | ||
+ | ** [http://www.uniprot.org/uniprot/P06785 P06785] | ||
+ | ** [http://www.uniprot.org/uniprot/P04818 P04818] | ||
+ | ** [http://www.uniprot.org/uniprot/P07607 P07607] | ||
+ | ** [http://www.uniprot.org/uniprot/P13100 P13100] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=thymidylate synthase}} |
− | {{#set: ec-number=ec-1. | + | {{#set: ec-number=ec-2.1.1.45}} |
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=1}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=8}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=orthology|annotation}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 14:26, 26 August 2019
Contents
Reaction THYMIDYLATESYN-RXN
- direction:
- left-to-right
- common-name:
- thymidylate synthase
- ec-number:
Reaction formula
- 1 DUMP[c] + 1 METHYLENE-THF-GLU-N[c] => 1 DIHYDROFOLATE-GLU-N[c] + 1 TMP[c]
Gene(s) associated with this reaction
- Gene: SJ19601
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-7187, pyrimidine deoxyribonucleotides de novo biosynthesis II: PWY-7187
- 6 reactions found over 7 reactions in the full pathway
- PWY-7199, pyrimidine deoxyribonucleosides salvage: PWY-7199
- 2 reactions found over 5 reactions in the full pathway
- PWY-7198, pyrimidine deoxyribonucleotides de novo biosynthesis IV: PWY-7198
- 6 reactions found over 7 reactions in the full pathway
- 1CMET2-PWY, N10-formyl-tetrahydrofolate biosynthesis: 1CMET2-PWY
- 8 reactions found over 9 reactions in the full pathway
- PWY-7184, pyrimidine deoxyribonucleotides de novo biosynthesis I: PWY-7184
- 9 reactions found over 9 reactions in the full pathway
- PWY-3841, folate transformations II: PWY-3841
- 9 reactions found over 11 reactions in the full pathway
- PWY-7210, pyrimidine deoxyribonucleotides biosynthesis from CTP: PWY-7210
- 8 reactions found over 8 reactions in the full pathway
- PWY0-166, superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): PWY0-166
- 14 reactions found over 13 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links