Difference between revisions of "2.7.11.4-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHIONINE--TRNA-LIGASE-RXN METHIONINE--TRNA-LIGASE-RXN] == * direction: ** left-to-right * common-...")
(Created page with "Category:reaction == Reaction RXN-13395 == * direction: ** left-to-right * common-name: ** arachidonate 5-lipoxygenase * ec-number: ** [http://enzyme.expasy.org/EC/1.13.11...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHIONINE--TRNA-LIGASE-RXN METHIONINE--TRNA-LIGASE-RXN] ==
+
== Reaction RXN-13395 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** methionine-trna ligase
+
** arachidonate 5-lipoxygenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.10 ec-6.1.1.10]
+
** [http://enzyme.expasy.org/EC/1.13.11.34 ec-1.13.11.34]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[Elongation-tRNAMet]][c] '''+''' 1 [[MET]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-MET-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[ARACHIDONIC_ACID]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CPD-8892]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[SJ10034]]
+
* Gene: [[SJ16634]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ03316]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ03581]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ14459]]
+
* Gene: [[SJ12567]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ21346]]
+
* Gene: [[SJ05858]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ16633]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ04411]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ10455]]
+
* Gene: [[SJ08276]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ15542]]
+
* Gene: [[SJ21862]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ16632]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ05859]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ21859]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ08291]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
+
* [[PWY66-392]], lipoxin biosynthesis:
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''1''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13482 13482]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R03659 R03659]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P56127 P56127]
 
−
** [http://www.uniprot.org/uniprot/Q44951 Q44951]
 
−
** [http://www.uniprot.org/uniprot/P47267 P47267]
 
−
** [http://www.uniprot.org/uniprot/O84035 O84035]
 
−
** [http://www.uniprot.org/uniprot/O28819 O28819]
 
−
** [http://www.uniprot.org/uniprot/O58721 O58721]
 
−
** [http://www.uniprot.org/uniprot/O83776 O83776]
 
−
** [http://www.uniprot.org/uniprot/O33925 O33925]
 
−
** [http://www.uniprot.org/uniprot/Q58659 Q58659]
 
−
** [http://www.uniprot.org/uniprot/O66738 O66738]
 
−
** [http://www.uniprot.org/uniprot/Q9ZCP0 Q9ZCP0]
 
−
** [http://www.uniprot.org/uniprot/Q9PP85 Q9PP85]
 
−
** [http://www.uniprot.org/uniprot/O26687 O26687]
 
−
** [http://www.uniprot.org/uniprot/O67298 O67298]
 
−
** [http://www.uniprot.org/uniprot/Q9JWP0 Q9JWP0]
 
−
** [http://www.uniprot.org/uniprot/Q9ZKG9 Q9ZKG9]
 
−
** [http://www.uniprot.org/uniprot/Q9Z959 Q9Z959]
 
−
** [http://www.uniprot.org/uniprot/Q9CHE0 Q9CHE0]
 
−
** [http://www.uniprot.org/uniprot/P43828 P43828]
 
−
** [http://www.uniprot.org/uniprot/P56192 P56192]
 
−
** [http://www.uniprot.org/uniprot/Q50319 Q50319]
 
−
** [http://www.uniprot.org/uniprot/P23920 P23920]
 
−
** [http://www.uniprot.org/uniprot/P75091 P75091]
 
−
** [http://www.uniprot.org/uniprot/Q55729 Q55729]
 
−
** [http://www.uniprot.org/uniprot/P22438 P22438]
 
−
** [http://www.uniprot.org/uniprot/P00958 P00958]
 
−
** [http://www.uniprot.org/uniprot/P00959 P00959]
 
−
** [http://www.uniprot.org/uniprot/Q9M2T9 Q9M2T9]
 
−
** [http://www.uniprot.org/uniprot/O23761 O23761]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=methionine-trna ligase}}
+
{{#set: common-name=arachidonate 5-lipoxygenase}}
−
{{#set: ec-number=ec-6.1.1.10}}
+
{{#set: ec-number=ec-1.13.11.34}}
−
{{#set: nb gene associated=7}}
+
{{#set: nb gene associated=11}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 20:43, 18 December 2020

Reaction RXN-13395

  • direction:
    • left-to-right
  • common-name:
    • arachidonate 5-lipoxygenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY66-392, lipoxin biosynthesis:
    • 1 reactions found over 11 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=2.7.11.4-RXN&oldid=50551"