Difference between revisions of "2.7.13.3-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction H2Othu == * direction: ** reversible * common-name: ** h2o transport by passive diffusion, thylakoid lumen == Reaction formula == * 1.0 WAT...")
(Created page with "Category:reaction == Reaction CYSTEINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** cysteine-trna ligase * ec-number: ** [http://enzyme.expasy.org/E...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction H2Othu ==
+
== Reaction CYSTEINE--TRNA-LIGASE-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** h2o transport by passive diffusion, thylakoid lumen
+
** cysteine-trna ligase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/6.1.1.16 ec-6.1.1.16]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[WATER]][u] '''<=>''' 1.0 [[WATER]][h]
+
* 1 [[ATP]][c] '''+''' 1 [[CYS]][c] '''+''' 1 [[CYS-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-CYS-tRNAs]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ00591]]
+
* Gene: [[SJ19796]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ14495]]
+
* Gene: [[SJ09098]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ12227]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ21439]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[TRNA-CHARGING-PWY]], tRNA charging:
 +
** '''21''' reactions found over '''21''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=reversible}}
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
{{#set: common-name=h2o transport by passive diffusion, thylakoid lumen}}
+
* RHEA:
−
{{#set: nb gene associated=2}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17774 17774]
−
{{#set: nb pathway associated=0}}
+
* LIGAND-RXN:
−
{{#set: reconstruction category=orthology}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R03650 R03650]
−
{{#set: reconstruction tool=pantograph}}
+
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q9PPB8 Q9PPB8]
 +
** [http://www.uniprot.org/uniprot/Q06752 Q06752]
 +
** [http://www.uniprot.org/uniprot/P43816 P43816]
 +
** [http://www.uniprot.org/uniprot/O29836 O29836]
 +
** [http://www.uniprot.org/uniprot/Q9CEJ0 Q9CEJ0]
 +
** [http://www.uniprot.org/uniprot/O58370 O58370]
 +
** [http://www.uniprot.org/uniprot/O83129 O83129]
 +
** [http://www.uniprot.org/uniprot/Q9ZE62 Q9ZE62]
 +
** [http://www.uniprot.org/uniprot/Q9ZKW6 Q9ZKW6]
 +
** [http://www.uniprot.org/uniprot/Q9WZH8 Q9WZH8]
 +
** [http://www.uniprot.org/uniprot/P41259 P41259]
 +
** [http://www.uniprot.org/uniprot/O51545 O51545]
 +
** [http://www.uniprot.org/uniprot/Q9Z6X4 Q9Z6X4]
 +
** [http://www.uniprot.org/uniprot/O67163 O67163]
 +
** [http://www.uniprot.org/uniprot/Q9JWJ3 Q9JWJ3]
 +
** [http://www.uniprot.org/uniprot/P47495 P47495]
 +
** [http://www.uniprot.org/uniprot/P75423 P75423]
 +
** [http://www.uniprot.org/uniprot/P74330 P74330]
 +
** [http://www.uniprot.org/uniprot/Q9UWP2 Q9UWP2]
 +
** [http://www.uniprot.org/uniprot/P21888 P21888]
 +
</div>
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=cysteine-trna ligase}}
 +
{{#set: ec-number=ec-6.1.1.16}}
 +
{{#set: nb gene associated=4}}
 +
{{#set: nb pathway associated=1}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 11:25, 15 January 2021

Reaction CYSTEINE--TRNA-LIGASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • cysteine-trna ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • TRNA-CHARGING-PWY, tRNA charging:
    • 21 reactions found over 21 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=2.7.13.3-RXN&oldid=115949"