Difference between revisions of "2.7.4.10-RXN"

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(Created page with "Category:reaction == Reaction GABATRANSAM-RXN == * direction: ** reversible * common-name: ** 4-aminobutyrate transaminase * ec-number: ** [http://enzyme.expasy.org/EC/2.6...")
(Created page with "Category:reaction == Reaction RXN-17608 == * direction: ** left-to-right * common-name: ** amidase * ec-number: ** [http://enzyme.expasy.org/EC/3.5.1.4 ec-3.5.1.4] == Reac...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GABATRANSAM-RXN ==
+
== Reaction RXN-17608 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** 4-aminobutyrate transaminase
+
** amidase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.6.1.19 ec-2.6.1.19]
+
** [http://enzyme.expasy.org/EC/3.5.1.4 ec-3.5.1.4]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[4-AMINO-BUTYRATE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[SUCC-S-ALD]][c]
+
* 1 [[CPD-19042]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[CPD-19014]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ07892]]
+
* Gene: [[SJ16279]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ01848]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ22527]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ11012]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[GLUDEG-I-PWY]], GABA shunt:
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6536]], 4-aminobutanoate degradation III:
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-6537]], 4-aminobutanoate degradation II:
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-5022]], 4-aminobutanoate degradation V:
 
−
** '''3''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-6535]], 4-aminobutanoate degradation I:
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-4321]], L-glutamate degradation IV:
 
−
** '''3''' reactions found over '''5''' reactions in the full pathway
 
−
* [[P181-PWY]], nicotine degradation I (pyridine pathway):
 
−
** '''2''' reactions found over '''17''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=left-to-right}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23355 23355]
+
{{#set: common-name=amidase}}
−
* LIGAND-RXN:
+
{{#set: ec-number=ec-3.5.1.4}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01648 R01648]
+
{{#set: nb gene associated=4}}
−
* UNIPROT:
+
{{#set: nb pathway associated=0}}
−
** [http://www.uniprot.org/uniprot/P22256 P22256]
+
{{#set: reconstruction category=annotation|orthology}}
−
** [http://www.uniprot.org/uniprot/P50457 P50457]
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
−
** [http://www.uniprot.org/uniprot/Q9UZ71 Q9UZ71]
 
−
** [http://www.uniprot.org/uniprot/P50554 P50554]
 
−
** [http://www.uniprot.org/uniprot/P80404 P80404]
 
−
** [http://www.uniprot.org/uniprot/P14010 P14010]
 
−
** [http://www.uniprot.org/uniprot/P17649 P17649]
 
−
** [http://www.uniprot.org/uniprot/P40829 P40829]
 
−
** [http://www.uniprot.org/uniprot/O13837 O13837]
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=4-aminobutyrate transaminase}}
 
−
{{#set: ec-number=ec-2.6.1.19}}
 
−
{{#set: nb gene associated=1}}
 
−
{{#set: nb pathway associated=7}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:36, 5 January 2021

Reaction RXN-17608

  • direction:
    • left-to-right
  • common-name:
    • amidase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

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