Difference between revisions of "2.7.8.15-RXN"

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(Created page with "Category:reaction == Reaction RXN-11889 == * direction: ** reversible * common-name: ** udp-n-acetylglucosamine:protein-l-serine β-n-acetylglucosaminyltransferase * e...")
(Created page with "Category:reaction == Reaction RXN-8026 == * direction: ** left-to-right * synonymous: ** crtz == Reaction formula == * 1 CPD-7409[c] '''+''' 1 OXYGEN-MOLECULE[c] '...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-11889 ==
+
== Reaction RXN-8026 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
+
* synonymous:
−
** udp-n-acetylglucosamine:protein-l-serine β-n-acetylglucosaminyltransferase
+
** crtz
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/2.4.1.255 ec-2.4.1.255]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Protein-L-serines]][c] '''+''' 1 [[UDP-N-ACETYL-D-GLUCOSAMINE]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[Protein-N-acetyl-D-glucosamin-L-serine]][c] '''+''' 1 [[UDP]][c]
+
* 1 [[CPD-7409]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''=>''' 1 [[CPD1F-130]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ07227]]
−
* Gene: [[SJ16030]]
+
** Category: [[manual]]
−
** Category: [[annotation]]
+
*** Source: [[sjap]], Tool: [[unknown-tool]], Assignment: n.a, Comment: transformation of diatoxanthin into diadinoxanthin (second cycle of xanthophylls)
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
* Gene: [[SJ07228]]
−
* Gene: [[SJ10979]]
+
** Category: [[manual]]
−
** Category: [[annotation]]
+
*** Source: [[sjap]], Tool: [[unknown-tool]], Assignment: n.a, Comment: transformation of diatoxanthin into diadinoxanthin (second cycle of xanthophylls)
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ00022]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ03824]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ01363]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ20364]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ11118]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ02718]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ02445]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ02444]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ15409]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ00215]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ17017]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-7638]], echinenone and zeaxanthin biosynthesis (Synechocystis):
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5944]], zeaxanthin biosynthesis:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5288]], astaxanthin biosynthesis (bacteria, fungi, algae):
 +
** '''2''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[manual]]; source: [[sjap]]; tool: [[curation]]; comment: transformation of beta carotene into zeaxanthin (with beta cryptoxanthin as an intermediate)
 
== External links  ==
 
== External links  ==
−
{{#set: direction=reversible}}
+
* LIGAND-RXN:
−
{{#set: common-name=udp-n-acetylglucosamine:protein-l-serine &beta;-n-acetylglucosaminyltransferase}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R07559 R07559]
−
{{#set: ec-number=ec-2.4.1.255}}
+
* RHEA:
−
{{#set: nb gene associated=13}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30330 30330]
−
{{#set: nb pathway associated=0}}
+
{{#set: direction=left-to-right}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: synonymous=crtz}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: nb gene associated=2}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction category=manual}}
 +
{{#set: reconstruction tool=curation}}
 +
{{#set: reconstruction comment=transformation of beta carotene into zeaxanthin (with beta cryptoxanthin as an intermediate)}}
 +
{{#set: reconstruction source=sjap}}

Revision as of 15:35, 5 January 2021

Reaction RXN-8026

  • direction:
    • left-to-right
  • synonymous:
    • crtz

Reaction formula

Gene(s) associated with this reaction

  • Gene: SJ07227
    • Category: manual
      • Source: sjap, Tool: unknown-tool, Assignment: n.a, Comment: transformation of diatoxanthin into diadinoxanthin (second cycle of xanthophylls)
  • Gene: SJ07228
    • Category: manual
      • Source: sjap, Tool: unknown-tool, Assignment: n.a, Comment: transformation of diatoxanthin into diadinoxanthin (second cycle of xanthophylls)

Pathway(s)

  • PWY-7638, echinenone and zeaxanthin biosynthesis (Synechocystis):
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-5944, zeaxanthin biosynthesis:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-5288, astaxanthin biosynthesis (bacteria, fungi, algae):
    • 2 reactions found over 10 reactions in the full pathway

Reconstruction information

  • category: manual; source: sjap; tool: curation; comment: transformation of beta carotene into zeaxanthin (with beta cryptoxanthin as an intermediate)

External links





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