Difference between revisions of "2.8.1.6-RXN"

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(Created page with "Category:reaction == Reaction THI-P-SYN-RXN == * direction: ** left-to-right * common-name: ** thiamine phosphate synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.5...")
(Created page with "Category:reaction == Reaction DIHYDROXYISOVALDEHYDRAT-RXN == * direction: ** left-to-right * common-name: ** 2,3-dihydroxy-isovalerate dehydratase * ec-number: ** [http://...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction THI-P-SYN-RXN ==
+
== Reaction DIHYDROXYISOVALDEHYDRAT-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** thiamine phosphate synthase
+
** 2,3-dihydroxy-isovalerate dehydratase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.5.1.3 ec-2.5.1.3]
+
** [http://enzyme.expasy.org/EC/4.2.1.9 ec-4.2.1.9]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[THZ-P]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[THIAMINE-P]][c]
+
* 1 [[CPD-13357]][c] '''=>''' 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ18183]]
+
* Gene: [[SJ19719]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
Line 16: Line 16:
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ20500]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6908]], thiamine diphosphate biosynthesis IV (eukaryotes):
+
* [[VALSYN-PWY]], L-valine biosynthesis:
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-7356]], thiamine salvage IV (yeast):
+
* [[PWY-7111]], pyruvate fermentation to isobutanol (engineered):
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-7357]], thiamine formation from pyrithiamine and oxythiamine (yeast):
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6897]], thiamine salvage II:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22329 22329]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24810 24810]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03223 R03223]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04441 R04441]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P41835 P41835]
+
** [http://www.uniprot.org/uniprot/P55186 P55186]
−
** [http://www.uniprot.org/uniprot/P71350 P71350]
+
** [http://www.uniprot.org/uniprot/Q9JUE0 Q9JUE0]
−
** [http://www.uniprot.org/uniprot/O25514 O25514]
+
** [http://www.uniprot.org/uniprot/P05791 P05791]
−
** [http://www.uniprot.org/uniprot/Q9PNL3 Q9PNL3]
+
** [http://www.uniprot.org/uniprot/Q9UZ03 Q9UZ03]
−
** [http://www.uniprot.org/uniprot/Q9JWI2 Q9JWI2]
+
** [http://www.uniprot.org/uniprot/P44851 P44851]
−
** [http://www.uniprot.org/uniprot/Q9ZL01 Q9ZL01]
+
** [http://www.uniprot.org/uniprot/Q02139 Q02139]
−
** [http://www.uniprot.org/uniprot/P30137 P30137]
+
** [http://www.uniprot.org/uniprot/Q9PJ98 Q9PJ98]
−
** [http://www.uniprot.org/uniprot/P39594 P39594]
+
** [http://www.uniprot.org/uniprot/P39522 P39522]
−
** [http://www.uniprot.org/uniprot/P40386 P40386]
 
−
** [http://www.uniprot.org/uniprot/P72965 P72965]
 
−
** [http://www.uniprot.org/uniprot/O48881 O48881]
 
−
** [http://www.uniprot.org/uniprot/O34294 O34294]
 
−
** [http://www.uniprot.org/uniprot/Q9ZBL5 Q9ZBL5]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=thiamine phosphate synthase}}
+
{{#set: common-name=2,3-dihydroxy-isovalerate dehydratase}}
−
{{#set: ec-number=ec-2.5.1.3}}
+
{{#set: ec-number=ec-4.2.1.9}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=2}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 19:05, 14 January 2021

Reaction DIHYDROXYISOVALDEHYDRAT-RXN

  • direction:
    • left-to-right
  • common-name:
    • 2,3-dihydroxy-isovalerate dehydratase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • VALSYN-PWY, L-valine biosynthesis:
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7111, pyruvate fermentation to isobutanol (engineered):
    • 4 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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