Difference between revisions of "2.8.1.6-RXN"

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(Created page with "Category:reaction == Reaction MALIC-NADP-RXN == * direction: ** left-to-right * common-name: ** malate dehydrogenase ** oxaloacetate decarboxylase * ec-number: ** [http://...")
(Created page with "Category:reaction == Reaction 2.8.1.6-RXN == * direction: ** left-to-right * common-name: ** biotin synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.8.1.6 ec-2.8.1....")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction MALIC-NADP-RXN ==
+
== Reaction 2.8.1.6-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** malate dehydrogenase
+
** biotin synthase
−
** oxaloacetate decarboxylase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.40 ec-1.1.1.40]
+
** [http://enzyme.expasy.org/EC/2.8.1.6 ec-2.8.1.6]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[MAL]][c] '''+''' 1 [[NADP]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PYRUVATE]][c]
+
* 1 [[DETHIOBIOTIN]][c] '''+''' 2 [[Reduced-2Fe-2S-Ferredoxins]][c] '''+''' 2 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[Sulfurated-Sulfur-Acceptors]][c] '''=>''' 1 [[BIOTIN]][c] '''+''' 2 [[CH33ADO]][c] '''+''' 2 [[MET]][c] '''+''' 2 [[Oxidized-2Fe-2S-Ferredoxins]][c] '''+''' 1 [[Unsulfurated-Sulfur-Acceptors]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ13180]]
+
* Gene: [[SJ16348]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ14191]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ11643]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
Line 23: Line 16:
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type:
+
* [[PWY-7380]], biotin biosynthesis from 8-amino-7-oxononanoate II:
−
** '''10''' reactions found over '''14''' reactions in the full pathway
+
** '''2''' reactions found over '''4''' reactions in the full pathway
−
* [[GLUCONEO-PWY]], gluconeogenesis I:
+
* [[PWY0-1507]], biotin biosynthesis from 8-amino-7-oxononanoate I:
−
** '''12''' reactions found over '''13''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-241]], C4 photosynthetic carbon assimilation cycle, NADP-ME type:
 
−
** '''5''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* METANETX-RXN : MNXR101443
+
* METANETX-RXN : MNXR115224
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18254 18254]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22061 22061]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00216 R00216]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01078 R01078]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P12628 P12628]
+
** [http://www.uniprot.org/uniprot/Q9JRW7 Q9JRW7]
−
** [http://www.uniprot.org/uniprot/P06801 P06801]
+
** [http://www.uniprot.org/uniprot/Q9PLZ3 Q9PLZ3]
−
** [http://www.uniprot.org/uniprot/P13697 P13697]
+
** [http://www.uniprot.org/uniprot/P53557 P53557]
−
** [http://www.uniprot.org/uniprot/P16243 P16243]
+
** [http://www.uniprot.org/uniprot/O67104 O67104]
−
** [http://www.uniprot.org/uniprot/O48656 O48656]
+
** [http://www.uniprot.org/uniprot/P44987 P44987]
−
** [http://www.uniprot.org/uniprot/P22178 P22178]
+
** [http://www.uniprot.org/uniprot/Q58692 Q58692]
−
** [http://www.uniprot.org/uniprot/P93139 P93139]
+
** [http://www.uniprot.org/uniprot/P0A506 P0A506]
−
** [http://www.uniprot.org/uniprot/P34105 P34105]
+
** [http://www.uniprot.org/uniprot/Q9Z6L5 Q9Z6L5]
−
** [http://www.uniprot.org/uniprot/P28227 P28227]
+
** [http://www.uniprot.org/uniprot/Q9JUE3 Q9JUE3]
−
** [http://www.uniprot.org/uniprot/P36444 P36444]
+
** [http://www.uniprot.org/uniprot/P46396 P46396]
−
** [http://www.uniprot.org/uniprot/P40927 P40927]
+
** [http://www.uniprot.org/uniprot/Q47862 Q47862]
−
** [http://www.uniprot.org/uniprot/P37223 P37223]
+
** [http://www.uniprot.org/uniprot/P19206 P19206]
−
** [http://www.uniprot.org/uniprot/P48163 P48163]
+
** [http://www.uniprot.org/uniprot/P32451 P32451]
−
** [http://www.uniprot.org/uniprot/Q16798 Q16798]
+
** [http://www.uniprot.org/uniprot/P54967 P54967]
−
** [http://www.uniprot.org/uniprot/O50015 O50015]
+
** [http://www.uniprot.org/uniprot/P46715 P46715]
−
** [http://www.uniprot.org/uniprot/O04935 O04935]
+
** [http://www.uniprot.org/uniprot/P73538 P73538]
−
** [http://www.uniprot.org/uniprot/O04936 O04936]
+
** [http://www.uniprot.org/uniprot/P12996 P12996]
−
** [http://www.uniprot.org/uniprot/P37222 P37222]
+
** [http://www.uniprot.org/uniprot/O59778 O59778]
−
** [http://www.uniprot.org/uniprot/Q42888 Q42888]
 
−
** [http://www.uniprot.org/uniprot/Q42889 Q42889]
 
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=malate dehydrogenase|oxaloacetate decarboxylase}}
+
{{#set: common-name=biotin synthase}}
−
{{#set: ec-number=ec-1.1.1.40}}
+
{{#set: ec-number=ec-2.8.1.6}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=2}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction 2.8.1.6-RXN

  • direction:
    • left-to-right
  • common-name:
    • biotin synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7380, biotin biosynthesis from 8-amino-7-oxononanoate II:
    • 2 reactions found over 4 reactions in the full pathway
  • PWY0-1507, biotin biosynthesis from 8-amino-7-oxononanoate I:
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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