Difference between revisions of "2.8.1.6-RXN"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY66-425 PWY66-425] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-40674 tax...")
(Created page with "Category:reaction == Reaction 2.8.1.6-RXN == * direction: ** left-to-right * common-name: ** biotin synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.8.1.6 ec-2.8.1....")
 
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY66-425 PWY66-425] ==
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== Reaction 2.8.1.6-RXN ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-40674 tax-40674]
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** left-to-right
 
* common-name:
 
* common-name:
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** l-lysine degradation ii (l-pipecolate pathway)
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** biotin synthase
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== Reaction(s) found ==
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* ec-number:
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* [[2-KETO-ADIPATE-DEHYDROG-RXN]]
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** [http://enzyme.expasy.org/EC/2.8.1.6 ec-2.8.1.6]
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== Reaction(s) not found ==
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== Reaction formula ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16267 RXN-16267]
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* 1 [[DETHIOBIOTIN]][c] '''+''' 2 [[Reduced-2Fe-2S-Ferredoxins]][c] '''+''' 2 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[Sulfurated-Sulfur-Acceptors]][c] '''=>''' 1 [[BIOTIN]][c] '''+''' 2 [[CH33ADO]][c] '''+''' 2 [[MET]][c] '''+''' 2 [[Oxidized-2Fe-2S-Ferredoxins]][c] '''+''' 1 [[Unsulfurated-Sulfur-Acceptors]][c]
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* [http://metacyc.org/META/NEW-IMAGE?object=2-AMINOADIPATE-AMINOTRANSFERASE-RXN 2-AMINOADIPATE-AMINOTRANSFERASE-RXN]
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== Gene(s) associated with this reaction  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8172 RXN-8172]
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* Gene: [[SJ16348]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8166 RXN-8166]
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** Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=L-PIPECOLATE-OXIDASE-RXN L-PIPECOLATE-OXIDASE-RXN]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=L-LYSINE-OXIDASE-RXN L-LYSINE-OXIDASE-RXN]
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** Category: [[orthology]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN66-565 RXN66-565]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10855 RXN-10855]
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== Pathway(s) ==
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{{#set: taxonomic-range=tax-40674}}
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* [[PWY-7380]], biotin biosynthesis from 8-amino-7-oxononanoate II:
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{{#set: common-name=l-lysine degradation ii (l-pipecolate pathway)}}
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** '''2''' reactions found over '''4''' reactions in the full pathway
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{{#set: nb reaction found=1}}
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* [[PWY0-1507]], biotin biosynthesis from 8-amino-7-oxononanoate I:
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{{#set: completion rate=0.11}}
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** '''3''' reactions found over '''4''' reactions in the full pathway
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{{#set: nb total reaction=9}}
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== Reconstruction information  ==
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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== External links  ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* METANETX-RXN : MNXR115224
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22061 22061]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R01078 R01078]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/Q9JRW7 Q9JRW7]
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** [http://www.uniprot.org/uniprot/Q9PLZ3 Q9PLZ3]
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** [http://www.uniprot.org/uniprot/P53557 P53557]
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** [http://www.uniprot.org/uniprot/O67104 O67104]
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** [http://www.uniprot.org/uniprot/P44987 P44987]
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** [http://www.uniprot.org/uniprot/Q58692 Q58692]
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** [http://www.uniprot.org/uniprot/P0A506 P0A506]
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** [http://www.uniprot.org/uniprot/Q9Z6L5 Q9Z6L5]
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** [http://www.uniprot.org/uniprot/Q9JUE3 Q9JUE3]
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** [http://www.uniprot.org/uniprot/P46396 P46396]
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** [http://www.uniprot.org/uniprot/Q47862 Q47862]
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** [http://www.uniprot.org/uniprot/P19206 P19206]
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** [http://www.uniprot.org/uniprot/P32451 P32451]
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** [http://www.uniprot.org/uniprot/P54967 P54967]
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** [http://www.uniprot.org/uniprot/P46715 P46715]
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** [http://www.uniprot.org/uniprot/P73538 P73538]
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** [http://www.uniprot.org/uniprot/P12996 P12996]
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** [http://www.uniprot.org/uniprot/O59778 O59778]
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</div>
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{{#set: direction=left-to-right}}
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{{#set: common-name=biotin synthase}}
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{{#set: ec-number=ec-2.8.1.6}}
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{{#set: nb gene associated=1}}
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{{#set: nb pathway associated=2}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction 2.8.1.6-RXN

  • direction:
    • left-to-right
  • common-name:
    • biotin synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7380, biotin biosynthesis from 8-amino-7-oxononanoate II:
    • 2 reactions found over 4 reactions in the full pathway
  • PWY0-1507, biotin biosynthesis from 8-amino-7-oxononanoate I:
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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