Difference between revisions of "2.8.1.6-RXN"

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(Created page with "Category:reaction == Reaction DIHYDROKAEMPFEROL-4-REDUCTASE-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.219 ec-1.1.1.219] == Re...")
(Created page with "Category:reaction == Reaction 2.8.1.6-RXN == * direction: ** left-to-right * common-name: ** biotin synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.8.1.6 ec-2.8.1....")
 
(5 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DIHYDROKAEMPFEROL-4-REDUCTASE-RXN ==
+
== Reaction 2.8.1.6-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** biotin synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.219 ec-1.1.1.219]
+
** [http://enzyme.expasy.org/EC/2.8.1.6 ec-2.8.1.6]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DIHYDROKAEMPFEROL-CMPD]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[LEUCOPELARGONIDIN-CMPD]][c] '''+''' 1 [[NADP]][c]
+
* 1 [[DETHIOBIOTIN]][c] '''+''' 2 [[Reduced-2Fe-2S-Ferredoxins]][c] '''+''' 2 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[Sulfurated-Sulfur-Acceptors]][c] '''=>''' 1 [[BIOTIN]][c] '''+''' 2 [[CH33ADO]][c] '''+''' 2 [[MET]][c] '''+''' 2 [[Oxidized-2Fe-2S-Ferredoxins]][c] '''+''' 1 [[Unsulfurated-Sulfur-Acceptors]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ21972]]
+
* Gene: [[SJ16348]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ06064]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ12213]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY1F-823]], leucopelargonidin and leucocyanidin biosynthesis:
+
* [[PWY-7380]], biotin biosynthesis from 8-amino-7-oxononanoate II:
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY0-1507]], biotin biosynthesis from 8-amino-7-oxononanoate I:
 
** '''3''' reactions found over '''4''' reactions in the full pathway
 
** '''3''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR115224
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23019 23019]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22061 22061]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03123 R03123]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01078 R01078]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P51102 P51102]
+
** [http://www.uniprot.org/uniprot/Q9JRW7 Q9JRW7]
−
** [http://www.uniprot.org/uniprot/P14720 P14720]
+
** [http://www.uniprot.org/uniprot/Q9PLZ3 Q9PLZ3]
−
** [http://www.uniprot.org/uniprot/P14721 P14721]
+
** [http://www.uniprot.org/uniprot/P53557 P53557]
−
** [http://www.uniprot.org/uniprot/P51106 P51106]
+
** [http://www.uniprot.org/uniprot/O67104 O67104]
−
** [http://www.uniprot.org/uniprot/P51105 P51105]
+
** [http://www.uniprot.org/uniprot/P44987 P44987]
−
** [http://www.uniprot.org/uniprot/P51107 P51107]
+
** [http://www.uniprot.org/uniprot/Q58692 Q58692]
−
** [http://www.uniprot.org/uniprot/P73212 P73212]
+
** [http://www.uniprot.org/uniprot/P0A506 P0A506]
−
** [http://www.uniprot.org/uniprot/O82105 O82105]
+
** [http://www.uniprot.org/uniprot/Q9Z6L5 Q9Z6L5]
−
** [http://www.uniprot.org/uniprot/Q9SAN4 Q9SAN4]
+
** [http://www.uniprot.org/uniprot/Q9JUE3 Q9JUE3]
−
** [http://www.uniprot.org/uniprot/P93776 P93776]
+
** [http://www.uniprot.org/uniprot/P46396 P46396]
−
** [http://www.uniprot.org/uniprot/P93777 P93777]
+
** [http://www.uniprot.org/uniprot/Q47862 Q47862]
−
** [http://www.uniprot.org/uniprot/P94105 P94105]
+
** [http://www.uniprot.org/uniprot/P19206 P19206]
−
** [http://www.uniprot.org/uniprot/O22589 O22589]
+
** [http://www.uniprot.org/uniprot/P32451 P32451]
−
** [http://www.uniprot.org/uniprot/O22605 O22605]
+
** [http://www.uniprot.org/uniprot/P54967 P54967]
−
** [http://www.uniprot.org/uniprot/P51104 P51104]
+
** [http://www.uniprot.org/uniprot/P46715 P46715]
−
** [http://www.uniprot.org/uniprot/Q9ZNV0 Q9ZNV0]
+
** [http://www.uniprot.org/uniprot/P73538 P73538]
−
** [http://www.uniprot.org/uniprot/Q9SAY2 Q9SAY2]
+
** [http://www.uniprot.org/uniprot/P12996 P12996]
−
** [http://www.uniprot.org/uniprot/P93840 P93840]
+
** [http://www.uniprot.org/uniprot/O59778 O59778]
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: ec-number=ec-1.1.1.219}}
+
{{#set: common-name=biotin synthase}}
−
{{#set: nb gene associated=3}}
+
{{#set: ec-number=ec-2.8.1.6}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb gene associated=1}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction 2.8.1.6-RXN

  • direction:
    • left-to-right
  • common-name:
    • biotin synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7380, biotin biosynthesis from 8-amino-7-oxononanoate II:
    • 2 reactions found over 4 reactions in the full pathway
  • PWY0-1507, biotin biosynthesis from 8-amino-7-oxononanoate I:
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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