Difference between revisions of "2.8.2.30-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYTIDEAM-RXN CYTIDEAM-RXN] == * direction: ** left-to-right * common-name: ** deoxycytidine deamina...")
(Created page with "Category:reaction == Reaction 2.8.2.30-RXN == * direction: ** left-to-right * common-name: ** [heparan sulfate]-glucosamine 3-o-sulfotransferase * ec-number: ** [http://en...")
 
(7 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYTIDEAM-RXN CYTIDEAM-RXN] ==
+
== Reaction 2.8.2.30-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** deoxycytidine deaminase
+
** [heparan sulfate]-glucosamine 3-o-sulfotransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.5.4.5 ec-3.5.4.5]
+
** [http://enzyme.expasy.org/EC/2.8.2.30 ec-2.8.2.30]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DEOXYCYTIDINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[DEOXYURIDINE]][c]
+
* 1 [[HEPARIN-GLUCOSAMINE]][c] '''+''' 1 [[PAPS]][c] '''=>''' 1 [[3-5-ADP]][c] '''+''' 1 [[HEPARIN-GLUCOSAMINE-3-O-SULFATE]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ17454]]
+
* Gene: [[SJ07694]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ00944]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ17721]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7199]], pyrimidine deoxyribonucleosides salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7199 PWY-7199]
+
* [[PWY-6558]], heparan sulfate biosynthesis (late stages):
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
** '''7''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY-7181]], pyrimidine deoxyribonucleosides degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7181 PWY-7181]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR115226
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13434 13434]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15462 15462]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02485 R02485]
+
** [http://www.genome.jp/dbget-bin/www_bget?R05798 R05798]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P47718 P47718]
 
−
** [http://www.uniprot.org/uniprot/P0ABF6 P0ABF6]
 
−
** [http://www.uniprot.org/uniprot/P47298 P47298]
 
−
** [http://www.uniprot.org/uniprot/Q9CFM8 Q9CFM8]
 
−
** [http://www.uniprot.org/uniprot/P32320 P32320]
 
−
** [http://www.uniprot.org/uniprot/P75051 P75051]
 
−
** [http://www.uniprot.org/uniprot/Q9SU87 Q9SU87]
 
−
** [http://www.uniprot.org/uniprot/Q9SU86 Q9SU86]
 
−
** [http://www.uniprot.org/uniprot/O65571 O65571]
 
−
** [http://www.uniprot.org/uniprot/Q9S847 Q9S847]
 
−
** [http://www.uniprot.org/uniprot/Q9S7L8 Q9S7L8]
 
−
** [http://www.uniprot.org/uniprot/Q9S7S2 Q9S7S2]
 
−
** [http://www.uniprot.org/uniprot/O65896 O65896]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=deoxycytidine deaminase}}
+
{{#set: common-name=[heparan sulfate]-glucosamine 3-o-sulfotransferase}}
−
{{#set: ec-number=ec-3.5.4.5}}
+
{{#set: ec-number=ec-2.8.2.30}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction 2.8.2.30-RXN

  • direction:
    • left-to-right
  • common-name:
    • [heparan sulfate]-glucosamine 3-o-sulfotransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6558, heparan sulfate biosynthesis (late stages):
    • 7 reactions found over 13 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR115226
  • RHEA:
  • LIGAND-RXN:

Property "Common-name" (as page type) with input value "heparan sulfate]-glucosamine 3-o-sulfotransferase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.




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