Difference between revisions of "23S-rRNA-2-methyladenine2503"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=NICOTINATEPRIBOSYLTRANS-RXN NICOTINATEPRIBOSYLTRANS-RXN] == * direction: ** left-to-right * common-...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TYROSINE-AMINOTRANSFERASE-RXN TYROSINE-AMINOTRANSFERASE-RXN] == * direction: ** reversible * common...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=NICOTINATEPRIBOSYLTRANS-RXN NICOTINATEPRIBOSYLTRANS-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TYROSINE-AMINOTRANSFERASE-RXN TYROSINE-AMINOTRANSFERASE-RXN] ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** nicotinate phosphoribosyltransferase
+
** l-phenylalanine:2-oxoglutarate aminotransferase
 +
** l-tyrosine:2-oxoglutarate aminotransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.3.4.21 ec-6.3.4.21]
+
** [http://enzyme.expasy.org/EC/2.6.1.57 ec-2.6.1.57]
 +
** [http://enzyme.expasy.org/EC/2.6.1.5 ec-2.6.1.5]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[NIACINE]][c] '''+''' 1 [[PRPP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[NICOTINATE_NUCLEOTIDE]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[TYR]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[P-HYDROXY-PHENYLPYRUVATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ04451]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ20943]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07466]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ05778]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ07646]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ04188]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PYRIDNUCSAL-PWY]], NAD salvage pathway I (PNC VI cycle): [http://metacyc.org/META/NEW-IMAGE?object=PYRIDNUCSAL-PWY PYRIDNUCSAL-PWY]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''4''' reactions found over '''6''' reactions in the full pathway
+
* [[PWY-3581]], (S)-reticuline biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3581 PWY-3581]
−
* [[PWY-5381]], pyridine nucleotide cycling (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5381 PWY-5381]
 
 
** '''6''' reactions found over '''11''' reactions in the full pathway
 
** '''6''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY3O-4108]], L-tyrosine degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY3O-4108 PWY3O-4108]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5048]], rosmarinic acid biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5048 PWY-5048]
 +
** '''1''' reactions found over '''10''' reactions in the full pathway
 +
* [[TYRFUMCAT-PWY]], L-tyrosine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=TYRFUMCAT-PWY TYRFUMCAT-PWY]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7514]], L-tyrosine degradation IV (to 4-methylphenol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7514 PWY-7514]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5886]], 4-hydroxyphenylpyruvate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5886 PWY-5886]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-7518]], atromentin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7518 PWY-7518]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[TYRSYN]], L-tyrosine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=TYRSYN TYRSYN]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5754]], 4-hydroxybenzoate biosynthesis I (eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5754 PWY-5754]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5151]], L-tyrosine degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5151 PWY-5151]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
</div>
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13393 13393]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15096 15096]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P74861 P74861]
 +
** [http://www.uniprot.org/uniprot/Q9UWK8 Q9UWK8]
 +
** [http://www.uniprot.org/uniprot/Q9UWK9 Q9UWK9]
 +
** [http://www.uniprot.org/uniprot/P95468 P95468]
 +
** [http://www.uniprot.org/uniprot/Q9JYA1 Q9JYA1]
 +
** [http://www.uniprot.org/uniprot/Q9JT83 Q9JT83]
 +
** [http://www.uniprot.org/uniprot/Q9UZ63 Q9UZ63]
 +
** [http://www.uniprot.org/uniprot/O58489 O58489]
 +
** [http://www.uniprot.org/uniprot/O59096 O59096]
 +
** [http://www.uniprot.org/uniprot/Q9PHA8 Q9PHA8]
 +
** [http://www.uniprot.org/uniprot/Q9V0L2 Q9V0L2]
 +
** [http://www.uniprot.org/uniprot/Q9Z7G5 Q9Z7G5]
 +
** [http://www.uniprot.org/uniprot/Q02636 Q02636]
 +
** [http://www.uniprot.org/uniprot/O84642 O84642]
 +
** [http://www.uniprot.org/uniprot/P17735 P17735]
 +
** [http://www.uniprot.org/uniprot/Q7M4A9 Q7M4A9]
 +
** [http://www.uniprot.org/uniprot/P04693 P04693]
 +
** [http://www.uniprot.org/uniprot/P04694 P04694]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01724 R01724]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00734 R00734]
−
* UNIPROT:
+
</div>
−
** [http://www.uniprot.org/uniprot/P22253 P22253]
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/P18133 P18133]
+
{{#set: common-name=l-phenylalanine:2-oxoglutarate aminotransferase|l-tyrosine:2-oxoglutarate aminotransferase}}
−
** [http://www.uniprot.org/uniprot/P39683 P39683]
+
{{#set: ec-number=ec-2.6.1.57|ec-2.6.1.5}}
−
{{#set: direction=left-to-right}}
+
{{#set: nb gene associated=5}}
−
{{#set: common-name=nicotinate phosphoribosyltransferase}}
+
{{#set: nb pathway associated=10}}
−
{{#set: ec-number=ec-6.3.4.21}}
 
−
{{#set: nb gene associated=1}}
 
−
{{#set: nb pathway associated=2}}
 
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}

Revision as of 14:25, 26 August 2019

Reaction TYROSINE-AMINOTRANSFERASE-RXN

  • direction:
    • reversible
  • common-name:
    • l-phenylalanine:2-oxoglutarate aminotransferase
    • l-tyrosine:2-oxoglutarate aminotransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-3581, (S)-reticuline biosynthesis I: PWY-3581
    • 6 reactions found over 11 reactions in the full pathway
  • PWY3O-4108, L-tyrosine degradation III: PWY3O-4108
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-5048, rosmarinic acid biosynthesis I: PWY-5048
    • 1 reactions found over 10 reactions in the full pathway
  • TYRFUMCAT-PWY, L-tyrosine degradation I: TYRFUMCAT-PWY
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7514, L-tyrosine degradation IV (to 4-methylphenol): PWY-7514
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-5886, 4-hydroxyphenylpyruvate biosynthesis: PWY-5886
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-7518, atromentin biosynthesis: PWY-7518
    • 1 reactions found over 2 reactions in the full pathway
  • TYRSYN, L-tyrosine biosynthesis I: TYRSYN
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-5754, 4-hydroxybenzoate biosynthesis I (eukaryotes): PWY-5754
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-5151, L-tyrosine degradation II: PWY-5151
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=23S-rRNA-2-methyladenine2503&oldid=22651"