Difference between revisions of "23S-rRNA-pseudouridine955-2504-2580"

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(Created page with "Category:gene == Gene SJ17838 == * transcription-direction: ** negative * right-end-position: ** 177565 * left-end-position: ** 164030 * centisome-position: ** 24.633863...")
(Created page with "Category:metabolite == Metabolite CPD-10280 == * common-name: ** lignoceroyl-coa * smiles: ** cccccccccccccccccccccccc(=o)sccnc(=o)ccnc(c(o)c(c)(c)cop([o-])(=o)op([o-])(=o...")
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[[Category:gene]]
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[[Category:metabolite]]
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== Gene SJ17838 ==
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== Metabolite CPD-10280 ==
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* transcription-direction:
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* common-name:
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** negative
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** lignoceroyl-coa
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* right-end-position:
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* smiles:
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** 177565
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** cccccccccccccccccccccccc(=o)sccnc(=o)ccnc(c(o)c(c)(c)cop([o-])(=o)op([o-])(=o)occ1(c(op(=o)([o-])[o-])c(o)c(o1)n3(c=nc2(c(n)=nc=nc=23))))=o
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* left-end-position:
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* inchi-key:
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** 164030
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** moymqyzwiukggy-jbkavqfisa-j
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* centisome-position:
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* molecular-weight:
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** 24.633863   
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** 1114.129
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== Organism(s) associated with this gene  ==
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== Reaction(s) known to consume the compound ==
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* [[S.japonica_carotenoid_curated]]
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* [[ACECOATRANS-RXN-CPD-10280/ACET//TETRACOSANOATE/ACETYL-COA.42.]]
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== Reaction(s) associated ==
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* [[RXN-13296]]
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* [[ATPASE-RXN]]
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* [[RXN-16415-TETRACOSANOATE/ATP/CO-A//CPD-10280/AMP/PPI.43.]]
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** Category: [[annotation]]
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* [[THIOESTER-RXN[CCO-CYTOSOL]-CPD-10280/WATER//TETRACOSANOATE/CO-A/PROTON.57.]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== Reaction(s) known to produce the compound ==
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* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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* [[RXN-13308]]
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** Category: [[annotation]]
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* [[RXN-16415-TETRACOSANOATE/ATP/CO-A//CPD-10280/AMP/PPI.43.]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[TRANS-2-ENOYL-COA-REDUCTASE-NAD+-RXN-CPD-10280/NAD//CPD-14282/NADH/PROTON.37.]]
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* [[RXN-12195]]
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== Reaction(s) of unknown directionality ==
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** Category: [[annotation]]
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{{#set: common-name=lignoceroyl-coa}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: inchi-key=inchikey=moymqyzwiukggy-jbkavqfisa-j}}
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* [[RXN-12196]]
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{{#set: molecular-weight=1114.129}}
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN0-5462]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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== Pathway(s) associated ==
 
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* [[PWY-7210]]
 
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** '''8''' reactions found over '''8''' reactions in the full pathway
 
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* [[PWY-7198]]
 
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** '''6''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-7184]]
 
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** '''9''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-6545]]
 
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** '''8''' reactions found over '''9''' reactions in the full pathway
 
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{{#set: transcription-direction=negative}}
 
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{{#set: right-end-position=177565}}
 
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{{#set: left-end-position=164030}}
 
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{{#set: centisome-position=24.633863    }}
 
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{{#set: organism associated=S.japonica_carotenoid_curated}}
 
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{{#set: nb reaction associated=5}}
 
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{{#set: nb pathway associated=4}}
 

Revision as of 20:32, 18 December 2020

Metabolite CPD-10280

  • common-name:
    • lignoceroyl-coa
  • smiles:
    • cccccccccccccccccccccccc(=o)sccnc(=o)ccnc(c(o)c(c)(c)cop([o-])(=o)op([o-])(=o)occ1(c(op(=o)([o-])[o-])c(o)c(o1)n3(c=nc2(c(n)=nc=nc=23))))=o
  • inchi-key:
    • moymqyzwiukggy-jbkavqfisa-j
  • molecular-weight:
    • 1114.129

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

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