Difference between revisions of "2PGADEHYDRAT-RXN"

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(Created page with "Category:reaction == Reaction 3.2.1.8-RXN == * direction: ** left-to-right * common-name: ** endo-1,4-beta-xylanase ** endo-1,4-β-xylanase * ec-number: ** [http://enz...")
(Created page with "Category:reaction == Reaction 2PGADEHYDRAT-RXN == * direction: ** reversible * common-name: ** enolase * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.11 ec-4.2.1.11] =...")
 
(One intermediate revision by the same user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3.2.1.8-RXN ==
+
== Reaction 2PGADEHYDRAT-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** endo-1,4-beta-xylanase
+
** enolase
−
** endo-1,4-β-xylanase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.2.1.8 ec-3.2.1.8]
+
** [http://enzyme.expasy.org/EC/4.2.1.11 ec-4.2.1.11]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[1-4-beta-Xylan]][c] '''+''' n [[WATER]][c] '''=>''' n [[1-4-D-xylooligosaccharides]][c]
+
* 1 [[2-PG]][c] '''<=>''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ06513]]
+
* Gene: [[SJ08386]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ10590]]
+
* Gene: [[SJ17529]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ13450]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6784]], cellulose and hemicellulose degradation (cellulolosome):
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
* [[GLUCONEO-PWY]], gluconeogenesis I:
 +
** '''12''' reactions found over '''13''' reactions in the full pathway
 +
* [[P124-PWY]], Bifidobacterium shunt:
 +
** '''12''' reactions found over '''15''' reactions in the full pathway
 +
* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative):
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[NPGLUCAT-PWY]], Entner-Doudoroff pathway II (non-phosphorylative):
 +
** '''4''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-1622]], formaldehyde assimilation I (serine pathway):
 +
** '''6''' reactions found over '''13''' reactions in the full pathway
 +
* [[P122-PWY]], heterolactic fermentation:
 +
** '''16''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate):
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[P341-PWY]], glycolysis V (Pyrococcus):
 +
** '''6''' reactions found over '''10''' reactions in the full pathway
 +
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate):
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose):
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY66-399]], gluconeogenesis III:
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-1042]], glycolysis IV:
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum):
 +
** '''10''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-7003]], glycerol degradation to butanol:
 +
** '''8''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered):
 +
** '''8''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6901]], superpathway of glucose and xylose degradation:
 +
** '''10''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7124]], ethene biosynthesis V (engineered):
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5723]], Rubisco shunt:
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7218]], photosynthetic 3-hydroxybutanoate biosynthesis (engineered):
 +
** '''7''' reactions found over '''4''' reactions in the full pathway
 +
</div>
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR97932
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10167 10167]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00658 R00658]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P10478 P10478]
+
** [http://www.uniprot.org/uniprot/P04764 P04764]
−
** [http://www.uniprot.org/uniprot/Q9R5M7 Q9R5M7]
+
** [http://www.uniprot.org/uniprot/P07322 P07322]
−
** [http://www.uniprot.org/uniprot/Q7M519 Q7M519]
+
** [http://www.uniprot.org/uniprot/P07323 P07323]
−
** [http://www.uniprot.org/uniprot/Q7M520 Q7M520]
+
** [http://www.uniprot.org/uniprot/P06733 P06733]
−
** [http://www.uniprot.org/uniprot/P35809 P35809]
+
** [http://www.uniprot.org/uniprot/P19140 P19140]
−
** [http://www.uniprot.org/uniprot/Q7M513 Q7M513]
+
** [http://www.uniprot.org/uniprot/P25704 P25704]
−
** [http://www.uniprot.org/uniprot/Q7M0W8 Q7M0W8]
+
** [http://www.uniprot.org/uniprot/P30575 P30575]
−
** [http://www.uniprot.org/uniprot/P23556 P23556]
+
** [http://www.uniprot.org/uniprot/P33675 P33675]
−
** [http://www.uniprot.org/uniprot/Q7M4V8 Q7M4V8]
+
** [http://www.uniprot.org/uniprot/P47647 P47647]
−
** [http://www.uniprot.org/uniprot/Q9R5M6 Q9R5M6]
+
** [http://www.uniprot.org/uniprot/Q9JU46 Q9JU46]
−
** [http://www.uniprot.org/uniprot/Q7M0X0 Q7M0X0]
+
** [http://www.uniprot.org/uniprot/P37869 P37869]
−
** [http://www.uniprot.org/uniprot/Q7M0W9 Q7M0W9]
+
** [http://www.uniprot.org/uniprot/Q9URB2 Q9URB2]
−
** [http://www.uniprot.org/uniprot/P45703 P45703]
+
** [http://www.uniprot.org/uniprot/Q9CIT0 Q9CIT0]
−
** [http://www.uniprot.org/uniprot/P18429 P18429]
+
** [http://www.uniprot.org/uniprot/Q9CHS7 Q9CHS7]
−
** [http://www.uniprot.org/uniprot/P40943 P40943]
+
** [http://www.uniprot.org/uniprot/P43806 P43806]
−
** [http://www.uniprot.org/uniprot/P54865 P54865]
+
** [http://www.uniprot.org/uniprot/P42448 P42448]
−
** [http://www.uniprot.org/uniprot/Q00177 Q00177]
+
** [http://www.uniprot.org/uniprot/P42848 P42848]
−
** [http://www.uniprot.org/uniprot/P79046 P79046]
+
** [http://www.uniprot.org/uniprot/Q05524 Q05524]
−
** [http://www.uniprot.org/uniprot/O83007 O83007]
+
** [http://www.uniprot.org/uniprot/P42897 P42897]
−
** [http://www.uniprot.org/uniprot/Q9UUQ2 Q9UUQ2]
+
** [http://www.uniprot.org/uniprot/P40370 P40370]
−
** [http://www.uniprot.org/uniprot/Q9HFA4 Q9HFA4]
+
** [http://www.uniprot.org/uniprot/P51913 P51913]
−
** [http://www.uniprot.org/uniprot/Q9F1V3 Q9F1V3]
+
** [http://www.uniprot.org/uniprot/P26300 P26300]
−
** [http://www.uniprot.org/uniprot/Q9AJR9 Q9AJR9]
+
** [http://www.uniprot.org/uniprot/Q42887 Q42887]
−
** [http://www.uniprot.org/uniprot/P29417 P29417]
+
** [http://www.uniprot.org/uniprot/P25696 P25696]
−
** [http://www.uniprot.org/uniprot/P26514 P26514]
+
** [http://www.uniprot.org/uniprot/P00924 P00924]
−
** [http://www.uniprot.org/uniprot/P26220 P26220]
+
** [http://www.uniprot.org/uniprot/P00925 P00925]
−
** [http://www.uniprot.org/uniprot/Q9R5P8 Q9R5P8]
+
** [http://www.uniprot.org/uniprot/P0A6P9 P0A6P9]
−
** [http://www.uniprot.org/uniprot/Q9R5P9 Q9R5P9]
+
** [http://www.uniprot.org/uniprot/P29201 P29201]
−
** [http://www.uniprot.org/uniprot/P09850 P09850]
+
** [http://www.uniprot.org/uniprot/P09104 P09104]
−
** [http://www.uniprot.org/uniprot/P14768 P14768]
+
** [http://www.uniprot.org/uniprot/P21550 P21550]
−
** [http://www.uniprot.org/uniprot/P45796 P45796]
+
** [http://www.uniprot.org/uniprot/P08734 P08734]
−
** [http://www.uniprot.org/uniprot/P29126 P29126]
+
** [http://www.uniprot.org/uniprot/Q7M4Y6 Q7M4Y6]
−
** [http://www.uniprot.org/uniprot/P29127 P29127]
+
** [http://www.uniprot.org/uniprot/P15429 P15429]
−
** [http://www.uniprot.org/uniprot/Q02244 Q02244]
+
** [http://www.uniprot.org/uniprot/P13929 P13929]
−
** [http://www.uniprot.org/uniprot/P40944 P40944]
+
** [http://www.uniprot.org/uniprot/P15007 P15007]
−
** [http://www.uniprot.org/uniprot/P55334 P55334]
+
** [http://www.uniprot.org/uniprot/P17182 P17182]
−
** [http://www.uniprot.org/uniprot/Q56013 Q56013]
+
** [http://www.uniprot.org/uniprot/P17183 P17183]
−
** [http://www.uniprot.org/uniprot/Q59256 Q59256]
+
** [http://www.uniprot.org/uniprot/P26301 P26301]
−
** [http://www.uniprot.org/uniprot/P55328 P55328]
+
** [http://www.uniprot.org/uniprot/P31683 P31683]
−
** [http://www.uniprot.org/uniprot/Q01426 Q01426]
+
** [http://www.uniprot.org/uniprot/Q54274 Q54274]
−
** [http://www.uniprot.org/uniprot/P55331 P55331]
+
** [http://www.uniprot.org/uniprot/P42896 P42896]
−
** [http://www.uniprot.org/uniprot/Q59257 Q59257]
+
** [http://www.uniprot.org/uniprot/Q27727 Q27727]
−
** [http://www.uniprot.org/uniprot/P51584 P51584]
+
** [http://www.uniprot.org/uniprot/Q9UWJ5 Q9UWJ5]
−
** [http://www.uniprot.org/uniprot/P49942 P49942]
+
** [http://www.uniprot.org/uniprot/P48285 P48285]
−
** [http://www.uniprot.org/uniprot/P55333 P55333]
+
** [http://www.uniprot.org/uniprot/Q12007 Q12007]
−
** [http://www.uniprot.org/uniprot/P55332 P55332]
+
** [http://www.uniprot.org/uniprot/P42222 P42222]
−
** [http://www.uniprot.org/uniprot/Q59790 Q59790]
+
** [http://www.uniprot.org/uniprot/P75189 P75189]
−
** [http://www.uniprot.org/uniprot/Q59300 Q59300]
+
** [http://www.uniprot.org/uniprot/P77972 P77972]
−
** [http://www.uniprot.org/uniprot/Q59301 Q59301]
+
** [http://www.uniprot.org/uniprot/Q49059 Q49059]
−
** [http://www.uniprot.org/uniprot/Q59674 Q59674]
+
** [http://www.uniprot.org/uniprot/P42895 P42895]
−
** [http://www.uniprot.org/uniprot/Q59675 Q59675]
+
** [http://www.uniprot.org/uniprot/Q42971 Q42971]
−
** [http://www.uniprot.org/uniprot/Q60037 Q60037]
+
** [http://www.uniprot.org/uniprot/Q43130 Q43130]
−
** [http://www.uniprot.org/uniprot/Q12579 Q12579]
+
** [http://www.uniprot.org/uniprot/O69174 O69174]
−
** [http://www.uniprot.org/uniprot/Q12580 Q12580]
 
−
** [http://www.uniprot.org/uniprot/Q60046 Q60046]
 
−
** [http://www.uniprot.org/uniprot/P93185 P93185]
 
−
** [http://www.uniprot.org/uniprot/P93186 P93186]
 
−
** [http://www.uniprot.org/uniprot/P93187 P93187]
 
−
** [http://www.uniprot.org/uniprot/Q12603 Q12603]
 
−
** [http://www.uniprot.org/uniprot/O69230 O69230]
 
−
** [http://www.uniprot.org/uniprot/O30426 O30426]
 
−
** [http://www.uniprot.org/uniprot/O52373 O52373]
 
−
** [http://www.uniprot.org/uniprot/Q59278 Q59278]
 
−
** [http://www.uniprot.org/uniprot/Q9RKN6 Q9RKN6]
 
−
** [http://www.uniprot.org/uniprot/P00694 P00694]
 
 
</div>
 
</div>
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: common-name=endo-1,4-&beta;-xylanase|endo-1,4-beta-xylanase}}
+
{{#set: common-name=enolase}}
−
{{#set: ec-number=ec-3.2.1.8}}
+
{{#set: ec-number=ec-4.2.1.11}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=19}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:24, 18 March 2021

Reaction 2PGADEHYDRAT-RXN

  • direction:
    • reversible
  • common-name:
    • enolase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • GLUCONEO-PWY, gluconeogenesis I:
    • 12 reactions found over 13 reactions in the full pathway
  • P124-PWY, Bifidobacterium shunt:
    • 12 reactions found over 15 reactions in the full pathway
  • PWY-2221, Entner-Doudoroff pathway III (semi-phosphorylative):
    • 6 reactions found over 9 reactions in the full pathway
  • NPGLUCAT-PWY, Entner-Doudoroff pathway II (non-phosphorylative):
    • 4 reactions found over 9 reactions in the full pathway
  • PWY-1622, formaldehyde assimilation I (serine pathway):
    • 6 reactions found over 13 reactions in the full pathway
  • P122-PWY, heterolactic fermentation:
    • 16 reactions found over 18 reactions in the full pathway
  • PWY-5484, glycolysis II (from fructose 6-phosphate):
    • 10 reactions found over 11 reactions in the full pathway
  • P341-PWY, glycolysis V (Pyrococcus):
    • 6 reactions found over 10 reactions in the full pathway
  • GLYCOLYSIS, glycolysis I (from glucose 6-phosphate):
    • 11 reactions found over 12 reactions in the full pathway
  • ANAGLYCOLYSIS-PWY, glycolysis III (from glucose):
    • 10 reactions found over 11 reactions in the full pathway
  • PWY66-399, gluconeogenesis III:
    • 11 reactions found over 12 reactions in the full pathway
  • PWY-1042, glycolysis IV:
    • 9 reactions found over 10 reactions in the full pathway
  • PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum):
    • 10 reactions found over 13 reactions in the full pathway
  • PWY-7003, glycerol degradation to butanol:
    • 8 reactions found over 6 reactions in the full pathway
  • PWY-6886, 1-butanol autotrophic biosynthesis (engineered):
    • 8 reactions found over 5 reactions in the full pathway
  • PWY-6901, superpathway of glucose and xylose degradation:
    • 10 reactions found over 8 reactions in the full pathway
  • PWY-7124, ethene biosynthesis V (engineered):
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-5723, Rubisco shunt:
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-7218, photosynthetic 3-hydroxybutanoate biosynthesis (engineered):
    • 7 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=2PGADEHYDRAT-RXN&oldid=142668"