Difference between revisions of "3-HYDROXYBUTYRYL-COA-DEHYDROGENASE-RXN"

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(Created page with "Category:reaction == Reaction ORNCARBAMTRANSFER-RXN == * direction: ** reversible * common-name: ** ornithine carbamoyltransferase * ec-number: ** [http://enzyme.expasy.or...")
(Created page with "Category:reaction == Reaction RXN-8629 == * direction: ** reversible * common-name: ** h-gcv-protein-(dihydrolipoyl)lysine:nad+ oxidoreductase * ec-number: ** [http://enzy...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ORNCARBAMTRANSFER-RXN ==
+
== Reaction RXN-8629 ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
−
** ornithine carbamoyltransferase
+
** h-gcv-protein-(dihydrolipoyl)lysine:nad+ oxidoreductase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.1.3.3 ec-2.1.3.3]
+
** [http://enzyme.expasy.org/EC/1.8.1.4 ec-1.8.1.4]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CARBAMOYL-P]][c] '''+''' 1 [[L-ORNITHINE]][c] '''<=>''' 1 [[L-CITRULLINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[DIHYDROLIPOYL-GCVH]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[NADH]][c] '''+''' 1 [[PROTEIN-LIPOYLLYSINE]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ18541]]
+
* Gene: [[SJ03718]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ10661]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ13629]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ06474]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-4984]], urea cycle:
+
* [[GLYCLEAV-PWY]], glycine cleavage:
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[CITRULLINE-DEG-PWY]], L-citrulline degradation:
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle):
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7400]], L-arginine biosynthesis IV (archaebacteria):
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[ARGSYN-PWY]], L-arginine biosynthesis I (via L-ornithine):
 
−
** '''5''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-4981]], L-proline biosynthesis II (from arginine):
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
−
* [[CITRULBIO-PWY]], L-citrulline biosynthesis:
 
−
** '''7''' reactions found over '''8''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19516 19516]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01398 R01398]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q58291 Q58291]
 
−
** [http://www.uniprot.org/uniprot/Q9CHD1 Q9CHD1]
 
−
** [http://www.uniprot.org/uniprot/Q7M182 Q7M182]
 
−
** [http://www.uniprot.org/uniprot/Q9JTI4 Q9JTI4]
 
−
** [http://www.uniprot.org/uniprot/P11727 P11727]
 
−
** [http://www.uniprot.org/uniprot/Q9CEY4 Q9CEY4]
 
−
** [http://www.uniprot.org/uniprot/Q9CE14 Q9CE14]
 
−
** [http://www.uniprot.org/uniprot/Q9PNU6 Q9PNU6]
 
−
** [http://www.uniprot.org/uniprot/P44770 P44770]
 
−
** [http://www.uniprot.org/uniprot/Q9YHY9 Q9YHY9]
 
−
** [http://www.uniprot.org/uniprot/P11066 P11066]
 
−
** [http://www.uniprot.org/uniprot/P11803 P11803]
 
−
** [http://www.uniprot.org/uniprot/P18186 P18186]
 
−
** [http://www.uniprot.org/uniprot/P05150 P05150]
 
−
** [http://www.uniprot.org/uniprot/P14995 P14995]
 
−
** [http://www.uniprot.org/uniprot/P06960 P06960]
 
−
** [http://www.uniprot.org/uniprot/P04391 P04391]
 
−
** [http://www.uniprot.org/uniprot/P00480 P00480]
 
−
** [http://www.uniprot.org/uniprot/P11725 P11725]
 
−
** [http://www.uniprot.org/uniprot/P21302 P21302]
 
−
** [http://www.uniprot.org/uniprot/P11724 P11724]
 
−
** [http://www.uniprot.org/uniprot/P08308 P08308]
 
−
** [http://www.uniprot.org/uniprot/P68747 P68747]
 
−
** [http://www.uniprot.org/uniprot/P00481 P00481]
 
−
** [http://www.uniprot.org/uniprot/P31317 P31317]
 
−
** [http://www.uniprot.org/uniprot/Q01322 Q01322]
 
−
** [http://www.uniprot.org/uniprot/Q01323 Q01323]
 
−
** [http://www.uniprot.org/uniprot/Q01324 Q01324]
 
−
** [http://www.uniprot.org/uniprot/Q01326 Q01326]
 
−
** [http://www.uniprot.org/uniprot/Q01325 Q01325]
 
−
** [http://www.uniprot.org/uniprot/Q9JYI3 Q9JYI3]
 
−
** [http://www.uniprot.org/uniprot/Q01327 Q01327]
 
−
** [http://www.uniprot.org/uniprot/P0A5M9 P0A5M9]
 
−
** [http://www.uniprot.org/uniprot/Q02047 Q02047]
 
−
** [http://www.uniprot.org/uniprot/Q9TRC9 Q9TRC9]
 
−
** [http://www.uniprot.org/uniprot/Q48296 Q48296]
 
−
** [http://www.uniprot.org/uniprot/P75473 P75473]
 
−
** [http://www.uniprot.org/uniprot/Q49080 Q49080]
 
−
** [http://www.uniprot.org/uniprot/Q43814 Q43814]
 
−
** [http://www.uniprot.org/uniprot/O53089 O53089]
 
−
** [http://www.uniprot.org/uniprot/O50039 O50039]
 
−
</div>
 
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=ornithine carbamoyltransferase}}
+
{{#set: common-name=h-gcv-protein-(dihydrolipoyl)lysine:nad+ oxidoreductase}}
−
{{#set: ec-number=ec-2.1.3.3}}
+
{{#set: ec-number=ec-1.8.1.4}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=4}}
−
{{#set: nb pathway associated=7}}
+
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 19:05, 14 January 2021

Reaction RXN-8629

  • direction:
    • reversible
  • common-name:
    • h-gcv-protein-(dihydrolipoyl)lysine:nad+ oxidoreductase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • GLYCLEAV-PWY, glycine cleavage:
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=3-HYDROXYBUTYRYL-COA-DEHYDROGENASE-RXN&oldid=103249"