Difference between revisions of "3-HYDROXYBUTYRYL-COA-DEHYDROGENASE-RXN"
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(Created page with "Category:reaction == Reaction RXN-8629 == * direction: ** reversible * common-name: ** h-gcv-protein-(dihydrolipoyl)lysine:nad+ oxidoreductase * ec-number: ** [http://enzy...") |
(Created page with "Category:reaction == Reaction ORNCARBAMTRANSFER-RXN == * direction: ** reversible * common-name: ** ornithine carbamoyltransferase * ec-number: ** [http://enzyme.expasy.or...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction ORNCARBAMTRANSFER-RXN == |
* direction: | * direction: | ||
** reversible | ** reversible | ||
* common-name: | * common-name: | ||
− | ** | + | ** ornithine carbamoyltransferase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/1. | + | ** [http://enzyme.expasy.org/EC/2.1.3.3 ec-2.1.3.3] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[CARBAMOYL-P]][c] '''+''' 1 [[L-ORNITHINE]][c] '''<=>''' 1 [[L-CITRULLINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ18541]] |
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[ | + | * [[PWY-4984]], urea cycle: |
− | ** '''3''' reactions found over '''3''' reactions in the full pathway | + | ** '''5''' reactions found over '''5''' reactions in the full pathway |
+ | * [[CITRULLINE-DEG-PWY]], L-citrulline degradation: | ||
+ | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle): | ||
+ | ** '''9''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-7400]], L-arginine biosynthesis IV (archaebacteria): | ||
+ | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[ARGSYN-PWY]], L-arginine biosynthesis I (via L-ornithine): | ||
+ | ** '''5''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-4981]], L-proline biosynthesis II (from arginine): | ||
+ | ** '''3''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[CITRULBIO-PWY]], L-citrulline biosynthesis: | ||
+ | ** '''7''' reactions found over '''8''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19516 19516] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R01398 R01398] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/Q58291 Q58291] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CHD1 Q9CHD1] | ||
+ | ** [http://www.uniprot.org/uniprot/Q7M182 Q7M182] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JTI4 Q9JTI4] | ||
+ | ** [http://www.uniprot.org/uniprot/P11727 P11727] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CEY4 Q9CEY4] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CE14 Q9CE14] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PNU6 Q9PNU6] | ||
+ | ** [http://www.uniprot.org/uniprot/P44770 P44770] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9YHY9 Q9YHY9] | ||
+ | ** [http://www.uniprot.org/uniprot/P11066 P11066] | ||
+ | ** [http://www.uniprot.org/uniprot/P11803 P11803] | ||
+ | ** [http://www.uniprot.org/uniprot/P18186 P18186] | ||
+ | ** [http://www.uniprot.org/uniprot/P05150 P05150] | ||
+ | ** [http://www.uniprot.org/uniprot/P14995 P14995] | ||
+ | ** [http://www.uniprot.org/uniprot/P06960 P06960] | ||
+ | ** [http://www.uniprot.org/uniprot/P04391 P04391] | ||
+ | ** [http://www.uniprot.org/uniprot/P00480 P00480] | ||
+ | ** [http://www.uniprot.org/uniprot/P11725 P11725] | ||
+ | ** [http://www.uniprot.org/uniprot/P21302 P21302] | ||
+ | ** [http://www.uniprot.org/uniprot/P11724 P11724] | ||
+ | ** [http://www.uniprot.org/uniprot/P08308 P08308] | ||
+ | ** [http://www.uniprot.org/uniprot/P68747 P68747] | ||
+ | ** [http://www.uniprot.org/uniprot/P00481 P00481] | ||
+ | ** [http://www.uniprot.org/uniprot/P31317 P31317] | ||
+ | ** [http://www.uniprot.org/uniprot/Q01322 Q01322] | ||
+ | ** [http://www.uniprot.org/uniprot/Q01323 Q01323] | ||
+ | ** [http://www.uniprot.org/uniprot/Q01324 Q01324] | ||
+ | ** [http://www.uniprot.org/uniprot/Q01326 Q01326] | ||
+ | ** [http://www.uniprot.org/uniprot/Q01325 Q01325] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JYI3 Q9JYI3] | ||
+ | ** [http://www.uniprot.org/uniprot/Q01327 Q01327] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A5M9 P0A5M9] | ||
+ | ** [http://www.uniprot.org/uniprot/Q02047 Q02047] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9TRC9 Q9TRC9] | ||
+ | ** [http://www.uniprot.org/uniprot/Q48296 Q48296] | ||
+ | ** [http://www.uniprot.org/uniprot/P75473 P75473] | ||
+ | ** [http://www.uniprot.org/uniprot/Q49080 Q49080] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43814 Q43814] | ||
+ | ** [http://www.uniprot.org/uniprot/O53089 O53089] | ||
+ | ** [http://www.uniprot.org/uniprot/O50039 O50039] | ||
+ | </div> | ||
{{#set: direction=reversible}} | {{#set: direction=reversible}} | ||
− | {{#set: common-name= | + | {{#set: common-name=ornithine carbamoyltransferase}} |
− | {{#set: ec-number=ec-1. | + | {{#set: ec-number=ec-2.1.3.3}} |
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=1}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=7}} |
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
{{#set: reconstruction tool=pathwaytools|pantograph}} | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 11:25, 15 January 2021
Contents
Reaction ORNCARBAMTRANSFER-RXN
- direction:
- reversible
- common-name:
- ornithine carbamoyltransferase
- ec-number:
Reaction formula
- 1 CARBAMOYL-P[c] + 1 L-ORNITHINE[c] <=> 1 L-CITRULLINE[c] + 1 PROTON[c] + 1 Pi[c]
Gene(s) associated with this reaction
- Gene: SJ18541
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-4984, urea cycle:
- 5 reactions found over 5 reactions in the full pathway
- CITRULLINE-DEG-PWY, L-citrulline degradation:
- 1 reactions found over 3 reactions in the full pathway
- ARGSYNBSUB-PWY, L-arginine biosynthesis II (acetyl cycle):
- 9 reactions found over 9 reactions in the full pathway
- PWY-7400, L-arginine biosynthesis IV (archaebacteria):
- 7 reactions found over 9 reactions in the full pathway
- ARGSYN-PWY, L-arginine biosynthesis I (via L-ornithine):
- 5 reactions found over 4 reactions in the full pathway
- PWY-4981, L-proline biosynthesis II (from arginine):
- 3 reactions found over 6 reactions in the full pathway
- CITRULBIO-PWY, L-citrulline biosynthesis:
- 7 reactions found over 8 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT: