Difference between revisions of "3-HYDROXYDECANOYL-ACP-DEHYDR-RXN"

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(Created page with "Category:reaction == Reaction TYROSINE-DECARBOXYLASE-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/4.1.1.25 ec-4.1.1.25] == Reaction fo...")
(Created page with "Category:reaction == Reaction RXN0-2161 == * direction: ** left-to-right * common-name: ** l-serine:trnasec ligase (amp-forming) * ec-number: ** [http://enzyme.expasy.org/...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction TYROSINE-DECARBOXYLASE-RXN ==
+
== Reaction RXN0-2161 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** l-serine:trnasec ligase (amp-forming)
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.1.25 ec-4.1.1.25]
+
** [http://enzyme.expasy.org/EC/6.1.1.11 ec-6.1.1.11]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PROTON]][c] '''+''' 1 [[TYR]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[TYRAMINE]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[SER]][c] '''+''' 1 [[tRNA-Sec]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[L-seryl-SEC-tRNAs]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ11952]]
+
* Gene: [[SJ07311]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ14143]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6133]], (S)-reticuline biosynthesis II:
+
* [[PWY0-901]], L-selenocysteine biosynthesis I (bacteria):
−
** '''2''' reactions found over '''7''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-7297]], octopamine biosynthesis:
+
* [[PWY-6281]], L-selenocysteine biosynthesis II (archaea and eukaryotes):
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-5254]], methanofuran biosynthesis:
 
−
** '''1''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6802]], salidroside biosynthesis:
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7826]], Amaryllidacea alkaloids biosynthesis:
 
−
** '''2''' reactions found over '''25''' reactions in the full pathway
 
−
* [[PWY-5474]], hydroxycinnamic acid tyramine amides biosynthesis:
 
−
** '''1''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-3581]], (S)-reticuline biosynthesis I:
 
−
** '''6''' reactions found over '''11''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14346 14346]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=42581 42581]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00736 R00736]
+
** [http://www.genome.jp/dbget-bin/www_bget?R08218 R08218]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q06086 Q06086]
 
−
** [http://www.uniprot.org/uniprot/P54768 P54768]
 
−
** [http://www.uniprot.org/uniprot/P54769 P54769]
 
−
** [http://www.uniprot.org/uniprot/P54770 P54770]
 
−
** [http://www.uniprot.org/uniprot/O82417 O82417]
 
−
** [http://www.uniprot.org/uniprot/P54771 P54771]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: ec-number=ec-4.1.1.25}}
+
{{#set: common-name=l-serine:trnasec ligase (amp-forming)}}
−
{{#set: nb gene associated=1}}
+
{{#set: ec-number=ec-6.1.1.11}}
−
{{#set: nb pathway associated=7}}
+
{{#set: nb gene associated=2}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 11:24, 15 January 2021

Reaction RXN0-2161

  • direction:
    • left-to-right
  • common-name:
    • l-serine:trnasec ligase (amp-forming)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-901, L-selenocysteine biosynthesis I (bacteria):
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-6281, L-selenocysteine biosynthesis II (archaea and eukaryotes):
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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