Difference between revisions of "3.1.1.75-RXN"

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(Created page with "Category:reaction == Reaction HISTIDINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** histidine-trna ligase * ec-number: ** [http://enzyme.expasy.org...")
(Created page with "Category:reaction == Reaction SUCCINATE--COA-LIGASE-GDP-FORMING-RXN == * direction: ** reversible * common-name: ** succinate-coa ligase * ec-number: ** [http://enzyme.exp...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction HISTIDINE--TRNA-LIGASE-RXN ==
+
== Reaction SUCCINATE--COA-LIGASE-GDP-FORMING-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** histidine-trna ligase
+
** succinate-coa ligase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.21 ec-6.1.1.21]
+
** [http://enzyme.expasy.org/EC/6.2.1.4 ec-6.2.1.4]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[HIS]][c] '''+''' 1 [[HIS-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-HIS-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[CO-A]][c] '''+''' 1 [[GTP]][c] '''+''' 1 [[SUC]][c] '''<=>''' 1 [[GDP]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[SUC-COA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ21166]]
+
* Gene: [[SJ03269]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ07221]]
+
* Gene: [[SJ21782]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging:
+
* [[PWY66-398]], TCA cycle III (animals):
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''10''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17314 17314]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22123 22123]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03655 R03655]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00432 R00432]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q9X0H5 Q9X0H5]
+
** [http://www.uniprot.org/uniprot/Q03184 Q03184]
−
** [http://www.uniprot.org/uniprot/O58028 O58028]
+
** [http://www.uniprot.org/uniprot/O08371 O08371]
−
** [http://www.uniprot.org/uniprot/O67223 O67223]
+
** [http://www.uniprot.org/uniprot/O84829 O84829]
−
** [http://www.uniprot.org/uniprot/Q9ZK27 Q9ZK27]
+
** [http://www.uniprot.org/uniprot/Q8LAD2 Q8LAD2]
−
** [http://www.uniprot.org/uniprot/Q9PPF4 Q9PPF4]
+
** [http://www.uniprot.org/uniprot/P53587 P53587]
−
** [http://www.uniprot.org/uniprot/P56455 P56455]
+
** [http://www.uniprot.org/uniprot/P53312 P53312]
−
** [http://www.uniprot.org/uniprot/Q58406 Q58406]
+
** [http://www.uniprot.org/uniprot/P36967 P36967]
−
** [http://www.uniprot.org/uniprot/O32039 O32039]
+
** [http://www.uniprot.org/uniprot/P13086 P13086]
−
** [http://www.uniprot.org/uniprot/O51160 O51160]
+
** [http://www.uniprot.org/uniprot/Q9Y436 Q9Y436]
−
** [http://www.uniprot.org/uniprot/O66522 O66522]
+
** [http://www.uniprot.org/uniprot/P68209 P68209]
−
** [http://www.uniprot.org/uniprot/Q9ZDL9 Q9ZDL9]
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/Q9JUZ9 Q9JUZ9]
+
{{#set: common-name=succinate-coa ligase}}
−
** [http://www.uniprot.org/uniprot/Q9CE78 Q9CE78]
+
{{#set: ec-number=ec-6.2.1.4}}
−
** [http://www.uniprot.org/uniprot/P47281 P47281]
 
−
** [http://www.uniprot.org/uniprot/O34459 O34459]
 
−
** [http://www.uniprot.org/uniprot/O83647 O83647]
 
−
** [http://www.uniprot.org/uniprot/O84547 O84547]
 
−
** [http://www.uniprot.org/uniprot/Q9Z7P1 Q9Z7P1]
 
−
** [http://www.uniprot.org/uniprot/P43823 P43823]
 
−
** [http://www.uniprot.org/uniprot/Q61035 Q61035]
 
−
** [http://www.uniprot.org/uniprot/P30053 P30053]
 
−
** [http://www.uniprot.org/uniprot/P46696 P46696]
 
−
** [http://www.uniprot.org/uniprot/P51348 P51348]
 
−
** [http://www.uniprot.org/uniprot/P75069 P75069]
 
−
** [http://www.uniprot.org/uniprot/Q55653 Q55653]
 
−
** [http://www.uniprot.org/uniprot/Q49027 Q49027]
 
−
** [http://www.uniprot.org/uniprot/P07263 P07263]
 
−
** [http://www.uniprot.org/uniprot/P60906 P60906]
 
−
** [http://www.uniprot.org/uniprot/P12081 P12081]
 
−
** [http://www.uniprot.org/uniprot/P93422 P93422]
 
−
** [http://www.uniprot.org/uniprot/O82413 O82413]
 
−
</div>
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=histidine-trna ligase}}
 
−
{{#set: ec-number=ec-6.1.1.21}}
 
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:02, 5 January 2021

Reaction SUCCINATE--COA-LIGASE-GDP-FORMING-RXN

  • direction:
    • reversible
  • common-name:
    • succinate-coa ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY66-398, TCA cycle III (animals):
    • 10 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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