Difference between revisions of "3.1.13.4-RXN"

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(Created page with "Category:reaction == Reaction SQUALENE-MONOOXYGENASE-RXN == * direction: ** left-to-right * common-name: ** squalene,nadph:oxygen oxidoreductase (2,3-epoxidizing) * ec-num...")
(Created page with "Category:reaction == Reaction 3.1.13.4-RXN == * direction: ** left-to-right * common-name: ** poly(a)-specific ribonuclease * ec-number: ** [http://enzyme.expasy.org/EC/3....")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction SQUALENE-MONOOXYGENASE-RXN ==
+
== Reaction 3.1.13.4-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** squalene,nadph:oxygen oxidoreductase (2,3-epoxidizing)
+
** poly(a)-specific ribonuclease
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.14.14.17 ec-1.14.14.17]
+
** [http://enzyme.expasy.org/EC/3.1.13.4 ec-3.1.13.4]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[Red-NADPH-Hemoprotein-Reductases]][c] '''+''' 1 [[SQUALENE]][c] '''=>''' 1 [[EPOXYSQUALENE]][c] '''+''' 1 [[Ox-NADPH-Hemoprotein-Reductases]][c] '''+''' 1 [[WATER]][c]
+
* n [[WATER]][c] '''+''' 1 [[mRNAs-With-PolyA-Tails]][c] '''=>''' n [[AMP]][c] '''+''' 1 [[mRNAs]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ00579]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ02384]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ13458]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ05576]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ03509]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ06404]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ10605]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ18467]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ10711]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ20721]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ16005]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ12089]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ17483]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ08676]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
</div>
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6098]], diploterol biosynthesis:
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-5670]], epoxysqualene biosynthesis:
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* METANETX-RXN : MNXR115252
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21941 21941]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R02874 R02874]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P52020 P52020]
+
** [http://www.uniprot.org/uniprot/P32521 P32521]
−
** [http://www.uniprot.org/uniprot/P32476 P32476]
+
** [http://www.uniprot.org/uniprot/Q09798 Q09798]
−
** [http://www.uniprot.org/uniprot/Q9T064 Q9T064]
 
−
** [http://www.uniprot.org/uniprot/O65829 O65829]
 
−
** [http://www.uniprot.org/uniprot/O65726 O65726]
 
−
** [http://www.uniprot.org/uniprot/O65727 O65727]
 
−
** [http://www.uniprot.org/uniprot/O65402 O65402]
 
−
** [http://www.uniprot.org/uniprot/O65403 O65403]
 
−
** [http://www.uniprot.org/uniprot/O65404 O65404]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=squalene,nadph:oxygen oxidoreductase (2,3-epoxidizing)}}
+
{{#set: common-name=poly(a)-specific ribonuclease}}
−
{{#set: ec-number=ec-1.14.14.17}}
+
{{#set: ec-number=ec-3.1.13.4}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=13}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction 3.1.13.4-RXN

  • direction:
    • left-to-right
  • common-name:
    • poly(a)-specific ribonuclease
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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