Difference between revisions of "3.1.26.3-RXN"

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(Created page with "Category:reaction == Reaction BIOTINLIG-RXN == * direction: ** left-to-right * common-name: ** biotin-[acetyl-coa-carboxylase] ligase * ec-number: ** [http://enzyme.expasy...")
(Created page with "Category:reaction == Reaction 3.1.26.3-RXN == * direction: ** left-to-right * common-name: ** ribonuclease iii ** ribonuclease * ec-number: ** [http://enzyme.expasy.org/EC...")
 
(2 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction BIOTINLIG-RXN ==
+
== Reaction 3.1.26.3-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** biotin-[acetyl-coa-carboxylase] ligase
+
** ribonuclease iii
 +
** ribonuclease
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.3.4.15 ec-6.3.4.15]
+
** [http://enzyme.expasy.org/EC/3.1.26.3 ec-3.1.26.3]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[BCCP-L-lysine]][c] '''+''' 1 [[BIOTIN]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[BCCP-biotin-L-lysine]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[RNASE-III-MRNA-PROCESSING-SUBSTRATE]][c] '''+''' 2 [[WATER]][c] '''=>''' 1 [[RNASE-III-PROCESSING-PRODUCT-MRNA]][c] '''+''' 2 [[mRNA-Fragments]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ10816]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ17141]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ01852]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ06657]]
+
* Gene: [[SJ15619]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ19949]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07132]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ08973]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ17143]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ08968]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY0-1264]], biotin-carboxyl carrier protein assembly:
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR115277
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P06709 P06709]
+
** [http://www.uniprot.org/uniprot/Q9PM40 Q9PM40]
−
** [http://www.uniprot.org/uniprot/Q9PJ27 Q9PJ27]
+
** [http://www.uniprot.org/uniprot/P51833 P51833]
−
** [http://www.uniprot.org/uniprot/Q9CEQ6 Q9CEQ6]
+
** [http://www.uniprot.org/uniprot/Q9CHD0 Q9CHD0]
−
** [http://www.uniprot.org/uniprot/Q9CED9 Q9CED9]
+
** [http://www.uniprot.org/uniprot/Q9JVD3 Q9JVD3]
−
** [http://www.uniprot.org/uniprot/Q9JWI7 Q9JWI7]
+
** [http://www.uniprot.org/uniprot/P44441 P44441]
−
** [http://www.uniprot.org/uniprot/P48445 P48445]
+
** [http://www.uniprot.org/uniprot/P0A7Y0 P0A7Y0]
−
** [http://www.uniprot.org/uniprot/P72816 P72816]
+
** [http://www.uniprot.org/uniprot/P09155 P09155]
 +
** [http://www.uniprot.org/uniprot/Q52698 Q52698]
 +
** [http://www.uniprot.org/uniprot/Q49034 Q49034]
 +
** [http://www.uniprot.org/uniprot/O69469 O69469]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=biotin-[acetyl-coa-carboxylase] ligase}}
+
{{#set: common-name=ribonuclease|ribonuclease iii}}
−
{{#set: ec-number=ec-6.3.4.15}}
+
{{#set: ec-number=ec-3.1.26.3}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=6}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction 3.1.26.3-RXN

  • direction:
    • left-to-right
  • common-name:
    • ribonuclease iii
    • ribonuclease
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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