Difference between revisions of "3.1.26.4-RXN"

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(Created page with "Category:reaction == Reaction 2.4.1.46-RXN == * direction: ** left-to-right * common-name: ** 1,2-diacylglycerol 3-beta-galactosyltransferase ** monogalactosyldiacylglycer...")
(Created page with "Category:reaction == Reaction SERINE-C-PALMITOYLTRANSFERASE-RXN == * direction: ** left-to-right * common-name: ** serine palmitoyltransferase * ec-number: ** [http://enzy...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 2.4.1.46-RXN ==
+
== Reaction SERINE-C-PALMITOYLTRANSFERASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 1,2-diacylglycerol 3-beta-galactosyltransferase
+
** serine palmitoyltransferase
−
** monogalactosyldiacylglycerol synthase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.4.1.46 ec-2.4.1.46]
+
** [http://enzyme.expasy.org/EC/2.3.1.50 ec-2.3.1.50]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-14553]][c] '''+''' 1 [[DIACYLGLYCEROL]][c] '''=>''' 1 [[D-Galactosyl-12-diacyl-glycerols]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[UDP]][c]
+
* 1 [[PALMITYL-COA]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[DEHYDROSPHINGANINE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[SJ11730]]
+
* Gene: [[SJ01689]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ01255]]
+
* Gene: [[SJ05058]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ13300]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ14527]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ02446]]
+
* Gene: [[SJ01690]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-401]], galactolipid biosynthesis I:
+
* [[PWY3DJ-12]], ceramide de novo biosynthesis:
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[SPHINGOLIPID-SYN-PWY]], sphingolipid biosynthesis (yeast):
 +
** '''4''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-5129]], sphingolipid biosynthesis (plants):
 +
** '''4''' reactions found over '''13''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14946 14946]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14762 14762]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02691 R02691]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01281 R01281]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/O81770 O81770]
+
** [http://www.uniprot.org/uniprot/P25045 P25045]
−
** [http://www.uniprot.org/uniprot/P93115 P93115]
+
** [http://www.uniprot.org/uniprot/O15270 O15270]
−
** [http://www.uniprot.org/uniprot/O82730 O82730]
+
** [http://www.uniprot.org/uniprot/P48241 P48241]
 +
** [http://www.uniprot.org/uniprot/Q09925 Q09925]
 +
** [http://www.uniprot.org/uniprot/P40970 P40970]
 +
** [http://www.uniprot.org/uniprot/Q9XVI6 Q9XVI6]
 +
** [http://www.uniprot.org/uniprot/Q20375 Q20375]
 +
** [http://www.uniprot.org/uniprot/Q9M304 Q9M304]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=1,2-diacylglycerol 3-beta-galactosyltransferase|monogalactosyldiacylglycerol synthase}}
+
{{#set: common-name=serine palmitoyltransferase}}
−
{{#set: ec-number=ec-2.4.1.46}}
+
{{#set: ec-number=ec-2.3.1.50}}
 
{{#set: nb gene associated=4}}
 
{{#set: nb gene associated=4}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=3}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:37, 5 January 2021

Reaction SERINE-C-PALMITOYLTRANSFERASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • serine palmitoyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY3DJ-12, ceramide de novo biosynthesis:
    • 2 reactions found over 4 reactions in the full pathway
  • SPHINGOLIPID-SYN-PWY, sphingolipid biosynthesis (yeast):
    • 4 reactions found over 11 reactions in the full pathway
  • PWY-5129, sphingolipid biosynthesis (plants):
    • 4 reactions found over 13 reactions in the full pathway

Reconstruction information

External links





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