Difference between revisions of "3.1.27.9-RXN"

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(Created page with "Category:reaction == Reaction RXN0-882 == * direction: ** left-to-right * common-name: ** 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase * ec-number: ** [http://enzy...")
(Created page with "Category:reaction == Reaction 3.1.27.9-RXN == * direction: ** left-to-right * common-name: ** trna-splicing endonuclease subunit sen2 * ec-number: ** [http://enzyme.expasy...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN0-882 ==
+
== Reaction 3.1.27.9-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
+
** trna-splicing endonuclease subunit sen2
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.17.7.1 ec-1.17.7.1]
+
** [http://enzyme.expasy.org/EC/4.6.1.16 ec-4.6.1.16]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2C-METH-D-ERYTHRITOL-CYCLODIPHOSPHATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''=>''' 1 [[HYDROXY-METHYL-BUTENYL-DIP]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[CPD0-2350]][c] '''=>''' 1 [[Pre-tRNA-3-prime-half-molecules]][c] '''+''' 1 [[Pre-tRNA-5-prime-half-molecules]][c] '''+''' 1 [[tRNA-Introns]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ05642]]
+
* Gene: [[SJ20336]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ00058]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7560]], methylerythritol phosphate pathway II:
+
* [[PWY-7803]], tRNA splicing II:
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6689]], tRNA splicing I:
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* METANETX-RXN : MNXR115290
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26121 26121]
+
* UNIPROT:
−
* LIGAND-RXN:
+
** [http://www.uniprot.org/uniprot/O07118 O07118]
−
** [http://www.genome.jp/dbget-bin/www_bget?R08689 R08689]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase}}
+
{{#set: common-name=trna-splicing endonuclease subunit sen2}}
−
{{#set: ec-number=ec-1.17.7.1}}
+
{{#set: ec-number=ec-4.6.1.16}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:20, 18 March 2021

Reaction 3.1.27.9-RXN

  • direction:
    • left-to-right
  • common-name:
    • trna-splicing endonuclease subunit sen2
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7803, tRNA splicing II:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-6689, tRNA splicing I:
    • 2 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR115290
  • UNIPROT:





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