Difference between revisions of "3.1.31.1-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.38-RXN 2.4.1.38-RXN] == * direction: ** left-to-right * common-name: ** β-n-acetylglucos...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=R524-RXN R524-RXN] == * direction: ** left-to-right * common-name: ** cyanase * ec-number: ** [http...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.38-RXN 2.4.1.38-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=R524-RXN R524-RXN] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** β-n-acetylglucosaminylglycopeptide β-1,4-galactosyltransferase
+
** cyanase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.4.1.38 ec-2.4.1.38]
+
** [http://enzyme.expasy.org/EC/4.2.1.104 ec-4.2.1.104]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[BETA-ACETYLGLUCOSAMINIDE]][c] '''+''' 1 [[CPD-14553]][c] '''=>''' 1 [[B-Gal-14-NacGlc-R]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[UDP]][c]
+
* 1 [[CPD-69]][c] '''+''' 1 [[HCO3]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBAMATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ14181]]
+
* Gene: [[SJ02288]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7837]], i antigen and I antigen biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7837 PWY-7837]
+
* [[CYANCAT-PWY]], cyanate degradation: [http://metacyc.org/META/NEW-IMAGE?object=CYANCAT-PWY CYANCAT-PWY]
−
** '''3''' reactions found over '''5''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-7434]], terminal O-glycans residues modification (via type 2 precursor disaccharide): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7434 PWY-7434]
 
−
** '''5''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-7831]], ABH and Lewis epitopes biosynthesis from type 2 precursor disaccharide: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7831 PWY-7831]
 
−
** '''2''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-7833]], biosynthesis of Lewis epitopes (H. pylori): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7833 PWY-7833]
 
−
** '''2''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22933 22933]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18490 18490]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04495 R04495]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03546 R03546]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P15535 P15535]
+
** [http://www.uniprot.org/uniprot/P00816 P00816]
−
** [http://www.uniprot.org/uniprot/P15291 P15291]
+
** [http://www.uniprot.org/uniprot/Q55367 Q55367]
−
** [http://www.uniprot.org/uniprot/Q7LZ60 Q7LZ60]
 
−
** [http://www.uniprot.org/uniprot/P08037 P08037]
 
−
** [http://www.uniprot.org/uniprot/Q90580 Q90580]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=β-n-acetylglucosaminylglycopeptide β-1,4-galactosyltransferase}}
+
{{#set: common-name=cyanase}}
−
{{#set: ec-number=ec-2.4.1.38}}
+
{{#set: ec-number=ec-4.2.1.104}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Revision as of 09:31, 27 August 2019

Reaction R524-RXN

  • direction:
    • left-to-right
  • common-name:
    • cyanase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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