Difference between revisions of "3.1.4.37-RXN"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5188 PWY-5188] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-33682 tax-3...")
(Created page with "Category:reaction == Reaction GLUTAMATE-DEHYDROGENASE-RXN == * direction: ** reversible * common-name: ** nad-dependent glutamate dehydrogenase * ec-number: ** [http://enz...")
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5188 PWY-5188] ==
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== Reaction GLUTAMATE-DEHYDROGENASE-RXN ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-33682 tax-33682]
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** reversible
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-1117 tax-1117]
 
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-1224 tax-1224]
 
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-2157 tax-2157]
 
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-3398 tax-3398]
 
 
* common-name:
 
* common-name:
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** tetrapyrrole biosynthesis i (from glutamate)
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** nad-dependent glutamate dehydrogenase
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== Reaction(s) found ==
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* ec-number:
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* [[GLURS-RXN]]
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** [http://enzyme.expasy.org/EC/1.4.1.2 ec-1.4.1.2]
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* [[GLUTRNAREDUCT-RXN]]
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== Reaction formula ==
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* [[GSAAMINOTRANS-RXN]]
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* 1 [[GLT]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
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* [[OHMETHYLBILANESYN-RXN]]
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== Gene(s) associated with this reaction  ==
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* [[PORPHOBILSYNTH-RXN]]
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* Gene: [[SJ00250]]
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* [[UROGENIIISYN-RXN]]
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** Category: [[annotation]]
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== Reaction(s) not found ==
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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All reactions of this pathways are in present
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** Category: [[orthology]]
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{{#set: taxonomic-range=tax-3398|tax-1117|tax-2157|tax-33682|tax-1224}}
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: common-name=tetrapyrrole biosynthesis i (from glutamate)}}
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* Gene: [[SJ20174]]
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{{#set: nb reaction found=6}}
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** Category: [[orthology]]
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{{#set: completion rate=1.0}}
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: nb total reaction=6}}
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ10621]]
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** Category: [[orthology]]
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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== Pathway(s)  ==
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* [[GLUTAMATE-DEG1-PWY]], L-glutamate degradation I:
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[ALACAT2-PWY]], L-alanine degradation II (to D-lactate):
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-5022]], 4-aminobutanoate degradation V:
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** '''3''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7126]], ethylene biosynthesis IV (engineered):
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-6728]], methylaspartate cycle:
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** '''11''' reactions found over '''19''' reactions in the full pathway
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* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate):
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** '''7''' reactions found over '''11''' reactions in the full pathway
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== Reconstruction information  ==
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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== External links  ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15136 15136]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R00243 R00243]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P20016 P20016]
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** [http://www.uniprot.org/uniprot/P28997 P28997]
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** [http://www.uniprot.org/uniprot/P41755 P41755]
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** [http://www.uniprot.org/uniprot/Q9JTP6 Q9JTP6]
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** [http://www.uniprot.org/uniprot/P00365 P00365]
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** [http://www.uniprot.org/uniprot/P93541 P93541]
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** [http://www.uniprot.org/uniprot/P80319 P80319]
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** [http://www.uniprot.org/uniprot/P24295 P24295]
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** [http://www.uniprot.org/uniprot/P27346 P27346]
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** [http://www.uniprot.org/uniprot/P33327 P33327]
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** [http://www.uniprot.org/uniprot/Q43260 Q43260]
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** [http://www.uniprot.org/uniprot/O04937 O04937]
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** [http://www.uniprot.org/uniprot/Q25415 Q25415]
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** [http://www.uniprot.org/uniprot/O74024 O74024]
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** [http://www.uniprot.org/uniprot/O59650 O59650]
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</div>
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{{#set: direction=reversible}}
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{{#set: common-name=nad-dependent glutamate dehydrogenase}}
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{{#set: ec-number=ec-1.4.1.2}}
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{{#set: nb gene associated=3}}
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{{#set: nb pathway associated=6}}
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{{#set: reconstruction category=annotation|orthology}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana}}

Revision as of 20:47, 18 December 2020

Reaction GLUTAMATE-DEHYDROGENASE-RXN

  • direction:
    • reversible
  • common-name:
    • nad-dependent glutamate dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • GLUTAMATE-DEG1-PWY, L-glutamate degradation I:
    • 1 reactions found over 1 reactions in the full pathway
  • ALACAT2-PWY, L-alanine degradation II (to D-lactate):
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-5022, 4-aminobutanoate degradation V:
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-7126, ethylene biosynthesis IV (engineered):
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6728, methylaspartate cycle:
    • 11 reactions found over 19 reactions in the full pathway
  • P162-PWY, L-glutamate degradation V (via hydroxyglutarate):
    • 7 reactions found over 11 reactions in the full pathway

Reconstruction information

External links





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