Difference between revisions of "3.2.1.52-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11521 RXN-11521] == * direction: ** left-to-right == Reaction formula == * 1 7-METHYLXANTHINE...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=D-OCTOPINE-DEHYDROGENASE-RXN D-OCTOPINE-DEHYDROGENASE-RXN] == * direction: ** left-to-right * commo...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11521 RXN-11521] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=D-OCTOPINE-DEHYDROGENASE-RXN D-OCTOPINE-DEHYDROGENASE-RXN] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** d-octopine dehydrogenase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/1.5 ec-1.5]
 +
* synonymous:
 +
** d-octopine synthase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[7-METHYLXANTHINE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-12481]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c]
+
* 1 [[Acceptor]][c] '''+''' 1 [[CPD-309]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ARG]][c] '''+''' 1 [[Donor-H2]][c] '''+''' 1 [[PYRUVATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ05674]]
+
* Gene: [[SJ15888]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ05668]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ05660]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13098]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6632]], caffeine degradation IV (bacteria, via demethylation and oxidation): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6632 PWY-6632]
+
* [[OCTOPINEDEG-PWY]], octopine degradation: [http://metacyc.org/META/NEW-IMAGE?object=OCTOPINEDEG-PWY OCTOPINEDEG-PWY]
−
** '''4''' reactions found over '''3''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
* UNIPROT:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07979 R07979]
+
** [http://www.uniprot.org/uniprot/P0A395 P0A395]
 +
** [http://www.uniprot.org/uniprot/P0A394 P0A394]
 +
** [http://www.uniprot.org/uniprot/Q44297 Q44297]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=4}}
+
{{#set: common-name=d-octopine dehydrogenase}}
 +
{{#set: ec-number=ec-1.5}}
 +
{{#set: synonymous=d-octopine synthase}}
 +
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 09:31, 27 August 2019

Reaction D-OCTOPINE-DEHYDROGENASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • d-octopine dehydrogenase
  • ec-number:
  • synonymous:
    • d-octopine synthase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links






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