Difference between revisions of "3.4.11.1-RXN"

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(Created page with "Category:reaction == Reaction RXN-17114 == * direction: ** left-to-right * common-name: ** (2e,6z,9z,12z,15z,18z)-tetracosahexaenoyl-coa hydratase ** enoyl-coa hydratase *...")
(Created page with "Category:reaction == Reaction 3.4.11.1-RXN == * direction: ** left-to-right * common-name: ** aminopeptidase * ec-number: ** [http://enzyme.expasy.org/EC/3.4.11.9 ec-3.4.1...")
 
(6 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-17114 ==
+
== Reaction 3.4.11.1-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** (2e,6z,9z,12z,15z,18z)-tetracosahexaenoyl-coa hydratase
+
** aminopeptidase
−
** enoyl-coa hydratase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.17 ec-4.2.1.17]
+
** [http://enzyme.expasy.org/EC/3.4.11.9 ec-3.4.11.9]
 +
** [http://enzyme.expasy.org/EC/3.4.11.1 ec-3.4.11.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-18492]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-18493]][c]
+
* 1 [[Protein-With-N-Terminal-X-Pro]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Amino-Acids-20]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Protein-With-N-Terminal-Pro]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ21032]]
−
* Gene: [[SJ10275]]
+
** Category: [[annotation]]
−
** Category: [[orthology]]
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
* Gene: [[SJ21022]]
−
* Gene: [[SJ21390]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ07211]]
+
* Gene: [[SJ00234]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ03584]]
+
* Gene: [[SJ21020]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ03913]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ14591]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7726]], (4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase):
 
−
** '''8''' reactions found over '''13''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR115426
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P27888 P27888]
 +
** [http://www.uniprot.org/uniprot/P00727 P00727]
 +
** [http://www.uniprot.org/uniprot/P68767 P68767]
 +
** [http://www.uniprot.org/uniprot/P45334 P45334]
 +
** [http://www.uniprot.org/uniprot/Q9JTI8 Q9JTI8]
 +
** [http://www.uniprot.org/uniprot/Q9PP04 Q9PP04]
 +
** [http://www.uniprot.org/uniprot/P24828 P24828]
 +
** [http://www.uniprot.org/uniprot/P23341 P23341]
 +
** [http://www.uniprot.org/uniprot/P28839 P28839]
 +
** [http://www.uniprot.org/uniprot/P30184 P30184]
 +
** [http://www.uniprot.org/uniprot/P31427 P31427]
 +
** [http://www.uniprot.org/uniprot/Q42876 Q42876]
 +
** [http://www.uniprot.org/uniprot/Q48531 Q48531]
 +
** [http://www.uniprot.org/uniprot/O24022 O24022]
 +
** [http://www.uniprot.org/uniprot/Q10712 Q10712]
 +
** [http://www.uniprot.org/uniprot/Q43034 Q43034]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=(2e,6z,9z,12z,15z,18z)-tetracosahexaenoyl-coa hydratase|enoyl-coa hydratase}}
+
{{#set: common-name=aminopeptidase}}
−
{{#set: ec-number=ec-4.2.1.17}}
+
{{#set: ec-number=ec-3.4.11.1|ec-3.4.11.9}}
−
{{#set: nb gene associated=6}}
+
{{#set: nb gene associated=4}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:18, 18 March 2021

Reaction 3.4.11.1-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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