Difference between revisions of "3.4.11.18-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALIC-NADP-RXN MALIC-NADP-RXN] == * direction: ** left-to-right * common-name: ** malate dehydrogen...")
 
(Created page with "Category:reaction == Reaction 3.4.11.18-RXN == * direction: ** left-to-right * common-name: ** methionine aminopeptidase * ec-number: ** [http://enzyme.expasy.org/EC/3.4.1...")
 
(9 intermediate revisions by 4 users not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALIC-NADP-RXN MALIC-NADP-RXN] ==
+
== Reaction 3.4.11.18-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** malate dehydrogenase
+
** methionine aminopeptidase
−
** oxaloacetate decarboxylase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.40 ec-1.1.1.40]
+
** [http://enzyme.expasy.org/EC/3.4.11.18 ec-3.4.11.18]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[MAL]][c] '''+''' 1 [[NADP]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PYRUVATE]][c]
+
* 1 [[Protein-With-N-Terminal-Met]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[MET]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Peptides-holder]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ13180]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ16939]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ16932]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ16573]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ02903]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ18138]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ14191]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ11643]]
+
* Gene: [[SJ01604]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7117 PWY-7117]
 
−
** '''10''' reactions found over '''12''' reactions in the full pathway
 
−
* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
 
−
** '''12''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-241]], C4 photosynthetic carbon assimilation cycle, NADP-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-241 PWY-241]
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* RHEA:
+
* METANETX-RXN : MNXR115431
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18254 18254]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00216 R00216]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P12628 P12628]
+
** [http://www.uniprot.org/uniprot/P38062 P38062]
−
** [http://www.uniprot.org/uniprot/P06801 P06801]
+
** [http://www.uniprot.org/uniprot/P47418 P47418]
−
** [http://www.uniprot.org/uniprot/P13697 P13697]
+
** [http://www.uniprot.org/uniprot/Q9PM25 Q9PM25]
−
** [http://www.uniprot.org/uniprot/P16243 P16243]
+
** [http://www.uniprot.org/uniprot/P28617 P28617]
−
** [http://www.uniprot.org/uniprot/O48656 O48656]
+
** [http://www.uniprot.org/uniprot/P44421 P44421]
−
** [http://www.uniprot.org/uniprot/P22178 P22178]
+
** [http://www.uniprot.org/uniprot/Q9UYT4 Q9UYT4]
−
** [http://www.uniprot.org/uniprot/P93139 P93139]
+
** [http://www.uniprot.org/uniprot/P0AE18 P0AE18]
−
** [http://www.uniprot.org/uniprot/P34105 P34105]
+
** [http://www.uniprot.org/uniprot/P50579 P50579]
−
** [http://www.uniprot.org/uniprot/P28227 P28227]
+
** [http://www.uniprot.org/uniprot/Q9JWK1 Q9JWK1]
−
** [http://www.uniprot.org/uniprot/P36444 P36444]
+
** [http://www.uniprot.org/uniprot/Q58725 Q58725]
−
** [http://www.uniprot.org/uniprot/P40927 P40927]
+
** [http://www.uniprot.org/uniprot/P56218 P56218]
−
** [http://www.uniprot.org/uniprot/P37223 P37223]
+
** [http://www.uniprot.org/uniprot/P19994 P19994]
−
** [http://www.uniprot.org/uniprot/P48163 P48163]
+
** [http://www.uniprot.org/uniprot/P22624 P22624]
−
** [http://www.uniprot.org/uniprot/Q16798 Q16798]
+
** [http://www.uniprot.org/uniprot/P0A1X6 P0A1X6]
−
** [http://www.uniprot.org/uniprot/O50015 O50015]
+
** [http://www.uniprot.org/uniprot/P41392 P41392]
−
** [http://www.uniprot.org/uniprot/O04935 O04935]
+
** [http://www.uniprot.org/uniprot/Q59509 Q59509]
−
** [http://www.uniprot.org/uniprot/O04936 O04936]
+
** [http://www.uniprot.org/uniprot/Q01662 Q01662]
−
** [http://www.uniprot.org/uniprot/P37222 P37222]
+
** [http://www.uniprot.org/uniprot/P95963 P95963]
−
** [http://www.uniprot.org/uniprot/Q42888 Q42888]
+
** [http://www.uniprot.org/uniprot/P53579 P53579]
−
** [http://www.uniprot.org/uniprot/Q42889 Q42889]
+
** [http://www.uniprot.org/uniprot/P53581 P53581]
 +
** [http://www.uniprot.org/uniprot/P53580 P53580]
 +
** [http://www.uniprot.org/uniprot/Q9FV49 Q9FV49]
 +
** [http://www.uniprot.org/uniprot/Q9Z9J4 Q9Z9J4]
 +
** [http://www.uniprot.org/uniprot/Q9RKR2 Q9RKR2]
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=oxaloacetate decarboxylase|malate dehydrogenase}}
+
{{#set: common-name=methionine aminopeptidase}}
−
{{#set: ec-number=ec-1.1.1.40}}
+
{{#set: ec-number=ec-3.4.11.18}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=6}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=0}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:21, 18 March 2021

Reaction 3.4.11.18-RXN

  • direction:
    • left-to-right
  • common-name:
    • methionine aminopeptidase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=3.4.11.18-RXN&oldid=141572"