Difference between revisions of "3.4.11.4-RXN"

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(Created page with "Category:reaction == Reaction RXN-1882 == * direction: ** reversible * common-name: ** gdp-d-mannose 3'',5''-epimerase * ec-number: ** [http://enzyme.expasy.org/EC/5.1.3.1...")
(Created page with "Category:reaction == Reaction 3.4.11.4-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/3.4.11.4 ec-3.4.11.4] == Reaction formula == * 1 [...")
 
(One intermediate revision by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction RXN-1882 ==
+
== Reaction 3.4.11.4-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
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* common-name:
 
−
** gdp-d-mannose 3'',5''-epimerase
 
 
* ec-number:
 
* ec-number:
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** [http://enzyme.expasy.org/EC/5.1.3.18 ec-5.1.3.18]
+
** [http://enzyme.expasy.org/EC/3.4.11.4 ec-3.4.11.4]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GDP-MANNOSE]][c] '''<=>''' 1 [[GDP-L-GALACTOSE]][c]
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* 1 [[TRIPEPTIDES]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Amino-Acids-20]][c] '''+''' 1 [[DIPEPTIDES]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ02713]]
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* Gene: [[SJ00234]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5115]], GDP-L-galactose biosynthesis:
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY4FS-13]], extended VTC2 cycle:
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY4FS-12]], VTC2 cycle:
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-882]], L-ascorbate biosynthesis I (L-galactose pathway):
 
−
** '''6''' reactions found over '''8''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* METANETX-RXN : MNXR115435
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11147 11147]
+
{{#set: direction=left-to-right}}
−
* LIGAND-RXN:
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{{#set: ec-number=ec-3.4.11.4}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00889 R00889]
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=gdp-d-mannose 3'',5''-epimerase}}
 
−
{{#set: ec-number=ec-5.1.3.18}}
 
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=4}}
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{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}

Latest revision as of 11:20, 18 March 2021

Reaction 3.4.11.4-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR115435





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