Difference between revisions of "3.4.16.2-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=D-XYLOSE-1-DEHYDROGENASE-NADP+-RXN D-XYLOSE-1-DEHYDROGENASE-NADP+-RXN] == * direction: ** reversibl...")
(Created page with "Category:reaction == Reaction ExchangeSeed-OXYGEN-MOLECULE == * direction: ** reversible == Reaction formula == * 1.0 OXYGEN-MOLECULE[C-BOUNDARY] '''<=>''' 1.0 OXYGE...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=D-XYLOSE-1-DEHYDROGENASE-NADP+-RXN D-XYLOSE-1-DEHYDROGENASE-NADP+-RXN] ==
+
== Reaction ExchangeSeed-OXYGEN-MOLECULE ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
−
* common-name:
 
−
** d-xylose dehydrogenase
 
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/1.1.1.179 ec-1.1.1.179]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[D-Xylopyranose]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[CPD-360]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c]
+
* 1.0 [[OXYGEN-MOLECULE]][C-BOUNDARY] '''<=>''' 1.0 [[OXYGEN-MOLECULE]][e]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ14637]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ12259]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6760]], D-xylose degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6760 PWY-6760]
 
−
** '''1''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22000 22000]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01430 R01430]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P49378 P49378]
 
−
** [http://www.uniprot.org/uniprot/P31867 P31867]
 
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=d-xylose dehydrogenase}}
+
{{#set: nb gene associated=0}}
−
{{#set: ec-number=ec-1.1.1.179}}
+
{{#set: nb pathway associated=0}}
−
{{#set: nb gene associated=2}}
+
{{#set: reconstruction category=manual}}
−
{{#set: nb pathway associated=1}}
+
{{#set: reconstruction tool=curation}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction source=import_from_medium}}
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=saccharina_japonica_genome}}
 

Revision as of 20:41, 18 December 2020

Reaction ExchangeSeed-OXYGEN-MOLECULE

  • direction:
    • reversible

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=3.4.16.2-RXN&oldid=49943"