Difference between revisions of "3.4.16.2-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=L-ASPARTATE-OXID-RXN L-ASPARTATE-OXID-RXN] == * direction: ** left-to-right * common-name: ** l-asp...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=D-XYLOSE-1-DEHYDROGENASE-NADP+-RXN D-XYLOSE-1-DEHYDROGENASE-NADP+-RXN] == * direction: ** reversibl...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=L-ASPARTATE-OXID-RXN L-ASPARTATE-OXID-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=D-XYLOSE-1-DEHYDROGENASE-NADP+-RXN D-XYLOSE-1-DEHYDROGENASE-NADP+-RXN] ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** l-aspartate oxidase
+
** d-xylose dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.4.3.16 ec-1.4.3.16]
+
** [http://enzyme.expasy.org/EC/1.1.1.179 ec-1.1.1.179]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[L-ASPARTATE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[IMINOASPARTATE]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[D-Xylopyranose]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[CPD-360]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ19480]]
+
* Gene: [[SJ14637]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ12259]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PYRIDNUCSYN-PWY]], NAD de novo biosynthesis I (from aspartate): [http://metacyc.org/META/NEW-IMAGE?object=PYRIDNUCSYN-PWY PYRIDNUCSYN-PWY]
+
* [[PWY-6760]], D-xylose degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6760 PWY-6760]
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''1''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-5316]], nicotine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5316 PWY-5316]
 
−
** '''3''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7342]], superpathway of nicotine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7342 PWY-7342]
 
−
** '''4''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25877 25877]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22000 22000]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00481 R00481]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01430 R01430]
−
** [http://www.genome.jp/dbget-bin/www_bget?R00357 R00357]
+
* UNIPROT:
−
{{#set: direction=left-to-right}}
+
** [http://www.uniprot.org/uniprot/P49378 P49378]
−
{{#set: common-name=l-aspartate oxidase}}
+
** [http://www.uniprot.org/uniprot/P31867 P31867]
−
{{#set: ec-number=ec-1.4.3.16}}
+
{{#set: direction=reversible}}
−
{{#set: nb gene associated=1}}
+
{{#set: common-name=d-xylose dehydrogenase}}
−
{{#set: nb pathway associated=3}}
+
{{#set: ec-number=ec-1.1.1.179}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: nb gene associated=2}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: nb pathway associated=1}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 09:31, 27 August 2019

Reaction D-XYLOSE-1-DEHYDROGENASE-NADP+-RXN

  • direction:
    • reversible
  • common-name:
    • d-xylose dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6760, D-xylose degradation III: PWY-6760
    • 1 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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