Difference between revisions of "3.4.21.105-RXN"

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(Created page with "Category:reaction == Reaction RXN-16097 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.3.1.93 ec-1.3.1.93] == Reaction formula == * 1 CP...")
(Created page with "Category:reaction == Reaction 2.8.2.30-RXN == * direction: ** left-to-right * common-name: ** [heparan sulfate]-glucosamine 3-o-sulfotransferase * ec-number: ** [http://en...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-16097 ==
+
== Reaction 2.8.2.30-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** [heparan sulfate]-glucosamine 3-o-sulfotransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.3.1.93 ec-1.3.1.93]
+
** [http://enzyme.expasy.org/EC/2.8.2.30 ec-2.8.2.30]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-17348]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CPD-12646]][c] '''+''' 1 [[NADP]][c]
+
* 1 [[HEPARIN-GLUCOSAMINE]][c] '''+''' 1 [[PAPS]][c] '''=>''' 1 [[3-5-ADP]][c] '''+''' 1 [[HEPARIN-GLUCOSAMINE-3-O-SULFATE]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ07694]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ00944]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ17721]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7725]], arachidonate biosynthesis V (8-detaturase, mammals):
+
* [[PWY-6558]], heparan sulfate biosynthesis (late stages):
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''7''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY-6598]], sciadonate biosynthesis:
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7601]], arachidonate biosynthesis IV (8-detaturase, lower eukaryotes):
 
−
** '''5''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15462 15462]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R05798 R05798]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: ec-number=ec-1.3.1.93}}
+
{{#set: common-name=[heparan sulfate]-glucosamine 3-o-sulfotransferase}}
−
{{#set: nb gene associated=0}}
+
{{#set: ec-number=ec-2.8.2.30}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb gene associated=3}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction comment=added for gapfilling}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
+
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 15:01, 5 January 2021

Reaction 2.8.2.30-RXN

  • direction:
    • left-to-right
  • common-name:
    • [heparan sulfate]-glucosamine 3-o-sulfotransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6558, heparan sulfate biosynthesis (late stages):
    • 7 reactions found over 13 reactions in the full pathway

Reconstruction information

External links

Property "Common-name" (as page type) with input value "heparan sulfate]-glucosamine 3-o-sulfotransferase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.




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