Difference between revisions of "3.4.21.92-RXN"

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(Created page with "Category:reaction == Reaction SERINE-O-ACETTRAN-RXN == * direction: ** left-to-right * common-name: ** serine acetyltransferase * ec-number: ** [http://enzyme.expasy.org/E...")
(Created page with "Category:reaction == Reaction ARG-OXIDATION-RXN == * direction: ** left-to-right * common-name: ** l-amino-acid oxidase * ec-number: ** [http://enzyme.expasy.org/EC/1.4.3....")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction SERINE-O-ACETTRAN-RXN ==
+
== Reaction ARG-OXIDATION-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** serine acetyltransferase
+
** l-amino-acid oxidase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.30 ec-2.3.1.30]
+
** [http://enzyme.expasy.org/EC/1.4.3.25 ec-1.4.3.25]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ACETYL-COA]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[ACETYLSERINE]][c] '''+''' 1 [[CO-A]][c]
+
* 1 [[ARG]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[CPD-824]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ19480]]
−
* Gene: [[SJ14691]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ00445]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ15518]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ00718]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ14890]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7870]], L-cysteine biosynthesis VII (from S-sulfo-L-cysteine):
+
* [[ARGDEG-IV-PWY]], L-arginine degradation VIII (arginine oxidase pathway):
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''1''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-7274]], D-cycloserine biosynthesis:
 
−
** '''1''' reactions found over '''6''' reactions in the full pathway
 
−
* [[CYSTSYN-PWY]], L-cysteine biosynthesis I:
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-6936]], seleno-amino acid biosynthesis (plants):
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24560 24560]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=51405 51405]
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00586 R00586]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q39533 Q39533]
 
−
** [http://www.uniprot.org/uniprot/Q06750 Q06750]
 
−
** [http://www.uniprot.org/uniprot/P71405 P71405]
 
−
** [http://www.uniprot.org/uniprot/Q9JR86 Q9JR86]
 
−
** [http://www.uniprot.org/uniprot/Q9PPF6 Q9PPF6]
 
−
** [http://www.uniprot.org/uniprot/P23145 P23145]
 
−
** [http://www.uniprot.org/uniprot/Q9CEI8 Q9CEI8]
 
−
** [http://www.uniprot.org/uniprot/P43886 P43886]
 
−
** [http://www.uniprot.org/uniprot/P32003 P32003]
 
−
** [http://www.uniprot.org/uniprot/P29847 P29847]
 
−
** [http://www.uniprot.org/uniprot/Q42588 Q42588]
 
−
** [http://www.uniprot.org/uniprot/Q39218 Q39218]
 
−
** [http://www.uniprot.org/uniprot/Q42538 Q42538]
 
−
** [http://www.uniprot.org/uniprot/P74089 P74089]
 
−
** [http://www.uniprot.org/uniprot/Q8W2B8 Q8W2B8]
 
−
** [http://www.uniprot.org/uniprot/Q8S895 Q8S895]
 
−
** [http://www.uniprot.org/uniprot/P93544 P93544]
 
−
** [http://www.uniprot.org/uniprot/O69218 O69218]
 
−
** [http://www.uniprot.org/uniprot/O32979 O32979]
 
−
** [http://www.uniprot.org/uniprot/P0A9D4 P0A9D4]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=serine acetyltransferase}}
+
{{#set: common-name=l-amino-acid oxidase}}
−
{{#set: ec-number=ec-2.3.1.30}}
+
{{#set: ec-number=ec-1.4.3.25}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 13:19, 14 January 2021

Reaction ARG-OXIDATION-RXN

  • direction:
    • left-to-right
  • common-name:
    • l-amino-acid oxidase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • ARGDEG-IV-PWY, L-arginine degradation VIII (arginine oxidase pathway):
    • 1 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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