Difference between revisions of "3.4.22.1-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction ARG-OXIDATION-RXN == * direction: ** left-to-right * common-name: ** l-amino-acid oxidase * ec-number: ** [http://enzyme.expasy.org/EC/1.4.3....")
(Created page with "Category:reaction == Reaction 2.5.1.19-RXN == * direction: ** reversible * common-name: ** 3-phosphoshikimate-1-carboxyvinyltransferase * ec-number: ** [http://enzyme.expa...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ARG-OXIDATION-RXN ==
+
== Reaction 2.5.1.19-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** l-amino-acid oxidase
+
** 3-phosphoshikimate-1-carboxyvinyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.4.3.25 ec-1.4.3.25]
+
** [http://enzyme.expasy.org/EC/2.5.1.19 ec-2.5.1.19]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ARG]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[CPD-824]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c]
+
* 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''+''' 1 [[SHIKIMATE-5P]][c] '''<=>''' 1 [[3-ENOLPYRUVYL-SHIKIMATE-5P]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ19480]]
+
* Gene: [[SJ10493]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ00445]]
+
* Gene: [[SJ06122]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[ARGDEG-IV-PWY]], L-arginine degradation VIII (arginine oxidase pathway):
+
* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate:
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
** '''6''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=51405 51405]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21259 21259]
−
{{#set: direction=left-to-right}}
+
* LIGAND-RXN:
−
{{#set: common-name=l-amino-acid oxidase}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R03460 R03460]
−
{{#set: ec-number=ec-1.4.3.25}}
+
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P22299 P22299]
 +
** [http://www.uniprot.org/uniprot/P07547 P07547]
 +
** [http://www.uniprot.org/uniprot/P08566 P08566]
 +
** [http://www.uniprot.org/uniprot/P22487 P22487]
 +
** [http://www.uniprot.org/uniprot/P52312 P52312]
 +
** [http://www.uniprot.org/uniprot/Q9JTT3 Q9JTT3]
 +
** [http://www.uniprot.org/uniprot/Q03421 Q03421]
 +
** [http://www.uniprot.org/uniprot/P19786 P19786]
 +
** [http://www.uniprot.org/uniprot/P17688 P17688]
 +
** [http://www.uniprot.org/uniprot/P24497 P24497]
 +
** [http://www.uniprot.org/uniprot/P23981 P23981]
 +
** [http://www.uniprot.org/uniprot/P23281 P23281]
 +
** [http://www.uniprot.org/uniprot/Q04570 Q04570]
 +
** [http://www.uniprot.org/uniprot/P43905 P43905]
 +
** [http://www.uniprot.org/uniprot/Q59975 Q59975]
 +
** [http://www.uniprot.org/uniprot/P12421 P12421]
 +
** [http://www.uniprot.org/uniprot/P07637 P07637]
 +
** [http://www.uniprot.org/uniprot/P19688 P19688]
 +
** [http://www.uniprot.org/uniprot/P0A6D3 P0A6D3]
 +
** [http://www.uniprot.org/uniprot/P11043 P11043]
 +
</div>
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=3-phosphoshikimate-1-carboxyvinyltransferase}}
 +
{{#set: ec-number=ec-2.5.1.19}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 11:27, 15 January 2021

Reaction 2.5.1.19-RXN

  • direction:
    • reversible
  • common-name:
    • 3-phosphoshikimate-1-carboxyvinyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6163, chorismate biosynthesis from 3-dehydroquinate:
    • 6 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=3.4.22.1-RXN&oldid=116711"