Difference between revisions of "3.4.22.1-RXN"

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(Created page with "Category:reaction == Reaction 2.5.1.19-RXN == * direction: ** reversible * common-name: ** 3-phosphoshikimate-1-carboxyvinyltransferase * ec-number: ** [http://enzyme.expa...")
(Created page with "Category:reaction == Reaction 3.4.22.1-RXN == * direction: ** left-to-right * common-name: ** cathepsin b * ec-number: ** [http://enzyme.expasy.org/EC/3.4.22.1 ec-3.4.22.1...")
 
(One intermediate revision by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 2.5.1.19-RXN ==
+
== Reaction 3.4.22.1-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** 3-phosphoshikimate-1-carboxyvinyltransferase
+
** cathepsin b
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.5.1.19 ec-2.5.1.19]
+
** [http://enzyme.expasy.org/EC/3.4.22.1 ec-3.4.22.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''+''' 1 [[SHIKIMATE-5P]][c] '''<=>''' 1 [[3-ENOLPYRUVYL-SHIKIMATE-5P]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[General-Protein-Substrates]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Peptides-holder]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ10493]]
+
* Gene: [[SJ13517]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ06122]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate:
 
−
** '''6''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21259 21259]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R03460 R03460]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P22299 P22299]
+
** [http://www.uniprot.org/uniprot/P07688 P07688]
−
** [http://www.uniprot.org/uniprot/P07547 P07547]
+
** [http://www.uniprot.org/uniprot/P07858 P07858]
−
** [http://www.uniprot.org/uniprot/P08566 P08566]
+
** [http://www.uniprot.org/uniprot/P10605 P10605]
−
** [http://www.uniprot.org/uniprot/P22487 P22487]
+
** [http://www.uniprot.org/uniprot/P00787 P00787]
−
** [http://www.uniprot.org/uniprot/P52312 P52312]
+
** [http://www.uniprot.org/uniprot/P43157 P43157]
−
** [http://www.uniprot.org/uniprot/Q9JTT3 Q9JTT3]
+
** [http://www.uniprot.org/uniprot/P43233 P43233]
−
** [http://www.uniprot.org/uniprot/Q03421 Q03421]
+
** [http://www.uniprot.org/uniprot/Q20950 Q20950]
−
** [http://www.uniprot.org/uniprot/P19786 P19786]
+
** [http://www.uniprot.org/uniprot/P43510 P43510]
−
** [http://www.uniprot.org/uniprot/P17688 P17688]
+
** [http://www.uniprot.org/uniprot/P43509 P43509]
−
** [http://www.uniprot.org/uniprot/P24497 P24497]
+
** [http://www.uniprot.org/uniprot/P43508 P43508]
−
** [http://www.uniprot.org/uniprot/P23981 P23981]
+
** [http://www.uniprot.org/uniprot/P43507 P43507]
−
** [http://www.uniprot.org/uniprot/P23281 P23281]
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/Q04570 Q04570]
+
{{#set: common-name=cathepsin b}}
−
** [http://www.uniprot.org/uniprot/P43905 P43905]
+
{{#set: ec-number=ec-3.4.22.1}}
−
** [http://www.uniprot.org/uniprot/Q59975 Q59975]
+
{{#set: nb gene associated=1}}
−
** [http://www.uniprot.org/uniprot/P12421 P12421]
+
{{#set: nb pathway associated=0}}
−
** [http://www.uniprot.org/uniprot/P07637 P07637]
+
{{#set: reconstruction category=orthology|annotation}}
−
** [http://www.uniprot.org/uniprot/P19688 P19688]
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
** [http://www.uniprot.org/uniprot/P0A6D3 P0A6D3]
 
−
** [http://www.uniprot.org/uniprot/P11043 P11043]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=3-phosphoshikimate-1-carboxyvinyltransferase}}
 
−
{{#set: ec-number=ec-2.5.1.19}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=1}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:24, 18 March 2021

Reaction 3.4.22.1-RXN

  • direction:
    • left-to-right
  • common-name:
    • cathepsin b
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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