Difference between revisions of "3.4.22.1-RXN"

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(Created page with "Category:reaction == Reaction RXN-7663 == * direction: ** left-to-right * common-name: ** chlorophyllide-a:geranyl-geranyl diphosphate geranyl-geranyl transferase * ec-num...")
(Created page with "Category:reaction == Reaction RXN-17730 == * direction: ** left-to-right * common-name: ** 2-acyl-1-alkyl-sn-glycerol 3-phosphate phosphohydrolase ** phosphatidate phospha...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-7663 ==
+
== Reaction RXN-17730 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** chlorophyllide-a:geranyl-geranyl diphosphate geranyl-geranyl transferase
+
** 2-acyl-1-alkyl-sn-glycerol 3-phosphate phosphohydrolase
 +
** phosphatidate phosphatase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.5.1.62 ec-2.5.1.62]
+
** [http://enzyme.expasy.org/EC/3.1.3.4 ec-3.1.3.4]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CHLOROPHYLLIDE-A]][c] '''+''' 1 [[GERANYLGERANYL-PP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CPD-7005]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[1-Alkyl-2-acyl-glycerol-3-phosphate]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[1-Alkyl-2-acyl-glycerol]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ07213]]
+
* Gene: [[SJ07984]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ13957]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ21389]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ07066]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ21676]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5064]], chlorophyll a biosynthesis II:
+
* [[PWY-7782]], plasmalogen biosynthesis:
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''11''' reactions found over '''16''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=chlorophyllide-a:geranyl-geranyl diphosphate geranyl-geranyl transferase}}
+
{{#set: common-name=2-acyl-1-alkyl-sn-glycerol 3-phosphate phosphohydrolase|phosphatidate phosphatase}}
−
{{#set: ec-number=ec-2.5.1.62}}
+
{{#set: ec-number=ec-3.1.3.4}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=5}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 15:07, 5 January 2021

Reaction RXN-17730

  • direction:
    • left-to-right
  • common-name:
    • 2-acyl-1-alkyl-sn-glycerol 3-phosphate phosphohydrolase
    • phosphatidate phosphatase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7782, plasmalogen biosynthesis:
    • 11 reactions found over 16 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=3.4.22.1-RXN&oldid=64597"