Difference between revisions of "3.4.24.64-RXN"
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(Created page with "Category:reaction == Reaction UDP-GLUCURONATE-DECARBOXYLASE-RXN == * direction: ** left-to-right * common-name: ** udp-xylose synthase * ec-number: ** [http://enzyme.expas...") |
(Created page with "Category:reaction == Reaction 3-DEHYDROQUINATE-DEHYDRATASE-RXN == * direction: ** reversible * common-name: ** 3-dehydroquinate dehydratase * ec-number: ** [http://enzyme....") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction 3-DEHYDROQUINATE-DEHYDRATASE-RXN == |
* direction: | * direction: | ||
− | ** | + | ** reversible |
* common-name: | * common-name: | ||
− | ** | + | ** 3-dehydroquinate dehydratase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/4. | + | ** [http://enzyme.expasy.org/EC/4.2.1.10 ec-4.2.1.10] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[DEHYDROQUINATE]][c] '''<=>''' 1 [[3-DEHYDRO-SHIKIMATE]][c] '''+''' 1 [[WATER]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ01054]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a |
− | * Gene: [[ | + | ** Category: [[orthology]] |
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ08386]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ10493]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ13450]] | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY-6707]], gallate biosynthesis: |
− | ** ''' | + | ** '''1''' reactions found over '''3''' reactions in the full pathway |
+ | * [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate: | ||
+ | ** '''6''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[QUINATEDEG-PWY]], quinate degradation I: | ||
+ | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-6416]], quinate degradation II: | ||
+ | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | * category: [[ | + | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * METANETX-RXN : MNXR97449 | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21099 21099] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R03084 R03084] |
− | {{#set: direction= | + | * UNIPROT: |
− | {{#set: common-name= | + | ** [http://www.uniprot.org/uniprot/P05195 P05195] |
− | {{#set: ec-number=ec-4. | + | ** [http://www.uniprot.org/uniprot/P46380 P46380] |
− | {{#set: nb gene associated= | + | ** [http://www.uniprot.org/uniprot/Q9CF39 Q9CF39] |
− | {{#set: nb pathway associated= | + | ** [http://www.uniprot.org/uniprot/P07547 P07547] |
− | {{#set: reconstruction category=annotation | + | ** [http://www.uniprot.org/uniprot/P08566 P08566] |
− | {{#set: reconstruction tool=pathwaytools | + | ** [http://www.uniprot.org/uniprot/P43878 P43878] |
+ | ** [http://www.uniprot.org/uniprot/P05194 P05194] | ||
+ | ** [http://www.uniprot.org/uniprot/Q58849 Q58849] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A4Z6 P0A4Z6] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PJ53 Q9PJ53] | ||
+ | ** [http://www.uniprot.org/uniprot/P05147 P05147] | ||
+ | ** [http://www.uniprot.org/uniprot/P24670 P24670] | ||
+ | ** [http://www.uniprot.org/uniprot/P35146 P35146] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42947 Q42947] | ||
+ | ** [http://www.uniprot.org/uniprot/Q48255 Q48255] | ||
+ | ** [http://www.uniprot.org/uniprot/P73367 P73367] | ||
+ | ** [http://www.uniprot.org/uniprot/O65917 O65917] | ||
+ | </div> | ||
+ | {{#set: direction=reversible}} | ||
+ | {{#set: common-name=3-dehydroquinate dehydratase}} | ||
+ | {{#set: ec-number=ec-4.2.1.10}} | ||
+ | {{#set: nb gene associated=4}} | ||
+ | {{#set: nb pathway associated=4}} | ||
+ | {{#set: reconstruction category=orthology|annotation}} | ||
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source= | + | {{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Revision as of 08:40, 15 March 2021
Contents
Reaction 3-DEHYDROQUINATE-DEHYDRATASE-RXN
- direction:
- reversible
- common-name:
- 3-dehydroquinate dehydratase
- ec-number:
Reaction formula
- 1 DEHYDROQUINATE[c] <=> 1 3-DEHYDRO-SHIKIMATE[c] + 1 WATER[c]
Gene(s) associated with this reaction
- Gene: SJ01054
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ08386
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ10493
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ13450
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
Pathway(s)
- PWY-6707, gallate biosynthesis:
- 1 reactions found over 3 reactions in the full pathway
- PWY-6163, chorismate biosynthesis from 3-dehydroquinate:
- 6 reactions found over 5 reactions in the full pathway
- QUINATEDEG-PWY, quinate degradation I:
- 1 reactions found over 3 reactions in the full pathway
- PWY-6416, quinate degradation II:
- 1 reactions found over 3 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
External links