Difference between revisions of "3.4.25.1-RXN"

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(Created page with "Category:reaction == Reaction 5.99.1.2-RXN == * direction: ** reversible * common-name: ** dna topoisomerase ** topoisomerase * ec-number: ** [http://enzyme.expasy.org/EC/...")
(Created page with "Category:reaction == Reaction 3.4.25.1-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/3.4.25.1 ec-3.4.25.1] == Reaction formula == * 1 [...")
 
(2 intermediate revisions by 2 users not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 5.99.1.2-RXN ==
+
== Reaction 3.4.25.1-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
 
−
** dna topoisomerase
 
−
** topoisomerase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.99.1.2 ec-5.99.1.2]
+
** [http://enzyme.expasy.org/EC/3.4.25.1 ec-3.4.25.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Negatively-super-coiled-DNAs]][c] '''<=>''' 1 [[Relaxed-DNAs]][c]
+
* 1 [[General-Protein-Substrates]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Peptides-holder]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[SJ04827]]
+
* Gene: [[SJ19380]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ21371]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ03239]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ05254]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ05154]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ01422]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ20471]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ22206]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ14598]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07403]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ01745]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ13260]]
+
* Gene: [[SJ01731]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ02796]]
+
* Gene: [[SJ19146]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ16900]]
+
* Gene: [[SJ13891]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ03763]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ04829]]
+
* Gene: [[SJ22180]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ02909]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ19115]]
+
* Gene: [[SJ07036]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ02496]]
+
* Gene: [[SJ19736]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ21105]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ21621]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ20307]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ15546]]
+
* Gene: [[SJ14712]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ10772]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ00010]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ08098]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ07149]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ03059]]
+
* Gene: [[SJ08597]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ16267]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ13417]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ20163]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ10684]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ01580]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ19500]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ07129]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ13261]]
+
* Gene: [[SJ00759]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ19269]]
+
* Gene: [[SJ11002]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ18021]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q7M0H8 Q7M0H8]
+
** [http://www.uniprot.org/uniprot/Q7DLR9 Q7DLR9]
−
** [http://www.uniprot.org/uniprot/Q07050 Q07050]
+
** [http://www.uniprot.org/uniprot/P28062 P28062]
−
** [http://www.uniprot.org/uniprot/Q9JWZ5 Q9JWZ5]
+
** [http://www.uniprot.org/uniprot/Q9TRJ7 Q9TRJ7]
−
** [http://www.uniprot.org/uniprot/Q59046 Q59046]
+
** [http://www.uniprot.org/uniprot/P30656 P30656]
−
** [http://www.uniprot.org/uniprot/Q9PLZ2 Q9PLZ2]
+
** [http://www.uniprot.org/uniprot/P30657 P30657]
−
** [http://www.uniprot.org/uniprot/P47368 P47368]
+
** [http://www.uniprot.org/uniprot/P28074 P28074]
−
** [http://www.uniprot.org/uniprot/Q9CG80 Q9CG80]
+
** [http://www.uniprot.org/uniprot/P40302 P40302]
−
** [http://www.uniprot.org/uniprot/P43704 P43704]
+
** [http://www.uniprot.org/uniprot/O24633 O24633]
−
** [http://www.uniprot.org/uniprot/P43012 P43012]
+
** [http://www.uniprot.org/uniprot/P40303 P40303]
−
** [http://www.uniprot.org/uniprot/P0A620 P0A620]
+
** [http://www.uniprot.org/uniprot/Q9V122 Q9V122]
−
** [http://www.uniprot.org/uniprot/P04786 P04786]
+
** [http://www.uniprot.org/uniprot/P40306 P40306]
−
** [http://www.uniprot.org/uniprot/P13099 P13099]
+
** [http://www.uniprot.org/uniprot/P28063 P28063]
−
** [http://www.uniprot.org/uniprot/P06612 P06612]
+
** [http://www.uniprot.org/uniprot/P25786 P25786]
−
** [http://www.uniprot.org/uniprot/P11387 P11387]
+
** [http://www.uniprot.org/uniprot/P28076 P28076]
−
** [http://www.uniprot.org/uniprot/P07799 P07799]
+
** [http://www.uniprot.org/uniprot/O13268 O13268]
−
** [http://www.uniprot.org/uniprot/P93119 P93119]
+
** [http://www.uniprot.org/uniprot/P34064 P34064]
−
** [http://www.uniprot.org/uniprot/O13463 O13463]
+
** [http://www.uniprot.org/uniprot/P60901 P60901]
−
** [http://www.uniprot.org/uniprot/Q94705 Q94705]
+
** [http://www.uniprot.org/uniprot/P18421 P18421]
−
** [http://www.uniprot.org/uniprot/Q04750 Q04750]
+
** [http://www.uniprot.org/uniprot/P18053 P18053]
−
** [http://www.uniprot.org/uniprot/P14294 P14294]
+
** [http://www.uniprot.org/uniprot/P28072 P28072]
−
** [http://www.uniprot.org/uniprot/P30181 P30181]
+
** [http://www.uniprot.org/uniprot/P22769 P22769]
−
** [http://www.uniprot.org/uniprot/P34185 P34185]
+
** [http://www.uniprot.org/uniprot/P25043 P25043]
−
** [http://www.uniprot.org/uniprot/P30189 P30189]
+
** [http://www.uniprot.org/uniprot/P28065 P28065]
−
** [http://www.uniprot.org/uniprot/P40114 P40114]
+
** [http://www.uniprot.org/uniprot/P30186 P30186]
−
** [http://www.uniprot.org/uniprot/P41511 P41511]
+
** [http://www.uniprot.org/uniprot/P60900 P60900]
−
** [http://www.uniprot.org/uniprot/Q8I3Z9 Q8I3Z9]
+
** [http://www.uniprot.org/uniprot/P34065 P34065]
−
** [http://www.uniprot.org/uniprot/Q26024 Q26024]
+
** [http://www.uniprot.org/uniprot/P34067 P34067]
−
** [http://www.uniprot.org/uniprot/Q27529 Q27529]
+
** [http://www.uniprot.org/uniprot/P40301 P40301]
−
** [http://www.uniprot.org/uniprot/P41512 P41512]
+
** [http://www.uniprot.org/uniprot/Q8AVD2 Q8AVD2]
−
** [http://www.uniprot.org/uniprot/O24307 O24307]
+
** [http://www.uniprot.org/uniprot/Q7LZF1 Q7LZF1]
−
** [http://www.uniprot.org/uniprot/P71196 P71196]
+
** [http://www.uniprot.org/uniprot/P40307 P40307]
−
** [http://www.uniprot.org/uniprot/O70157 O70157]
+
** [http://www.uniprot.org/uniprot/P23724 P23724]
−
** [http://www.uniprot.org/uniprot/O60126 O60126]
+
** [http://www.uniprot.org/uniprot/P28070 P28070]
−
** [http://www.uniprot.org/uniprot/O61660 O61660]
+
** [http://www.uniprot.org/uniprot/P22141 P22141]
 +
** [http://www.uniprot.org/uniprot/P49721 P49721]
 +
** [http://www.uniprot.org/uniprot/P49720 P49720]
 +
** [http://www.uniprot.org/uniprot/P25156 P25156]
 +
** [http://www.uniprot.org/uniprot/Q09682 Q09682]
 +
** [http://www.uniprot.org/uniprot/Q09720 Q09720]
 +
** [http://www.uniprot.org/uniprot/P48004 P48004]
 +
** [http://www.uniprot.org/uniprot/P38624 P38624]
 +
** [http://www.uniprot.org/uniprot/P32379 P32379]
 +
** [http://www.uniprot.org/uniprot/Q7LZF0 Q7LZF0]
 +
** [http://www.uniprot.org/uniprot/P62333 P62333]
 +
** [http://www.uniprot.org/uniprot/Q24178 Q24178]
 +
** [http://www.uniprot.org/uniprot/Q27575 Q27575]
 +
** [http://www.uniprot.org/uniprot/P21242 P21242]
 +
** [http://www.uniprot.org/uniprot/P21243 P21243]
 +
** [http://www.uniprot.org/uniprot/P23638 P23638]
 +
** [http://www.uniprot.org/uniprot/P23639 P23639]
 +
** [http://www.uniprot.org/uniprot/P12881 P12881]
 +
** [http://www.uniprot.org/uniprot/P25787 P25787]
 +
** [http://www.uniprot.org/uniprot/P20618 P20618]
 +
** [http://www.uniprot.org/uniprot/P25788 P25788]
 +
** [http://www.uniprot.org/uniprot/P25789 P25789]
 +
** [http://www.uniprot.org/uniprot/P18420 P18420]
 +
** [http://www.uniprot.org/uniprot/P18422 P18422]
 +
** [http://www.uniprot.org/uniprot/P21670 P21670]
 +
** [http://www.uniprot.org/uniprot/P52428 P52428]
 +
** [http://www.uniprot.org/uniprot/P93395 P93395]
 +
** [http://www.uniprot.org/uniprot/O04861 O04861]
 +
** [http://www.uniprot.org/uniprot/Q8LD27 Q8LD27]
 +
** [http://www.uniprot.org/uniprot/O48551 O48551]
 +
** [http://www.uniprot.org/uniprot/O24030 O24030]
 +
** [http://www.uniprot.org/uniprot/P42742 P42742]
 +
** [http://www.uniprot.org/uniprot/O81147 O81147]
 +
** [http://www.uniprot.org/uniprot/O23708 O23708]
 +
** [http://www.uniprot.org/uniprot/O24616 O24616]
 +
** [http://www.uniprot.org/uniprot/O81149 O81149]
 +
** [http://www.uniprot.org/uniprot/Q42134 Q42134]
 +
** [http://www.uniprot.org/uniprot/P34066 P34066]
 +
** [http://www.uniprot.org/uniprot/O23712 O23712]
 +
** [http://www.uniprot.org/uniprot/O23710 O23710]
 +
** [http://www.uniprot.org/uniprot/Q7DLS1 Q7DLS1]
 +
** [http://www.uniprot.org/uniprot/O81153 O81153]
 +
** [http://www.uniprot.org/uniprot/O23714 O23714]
 
</div>
 
</div>
−
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
−
{{#set: common-name=topoisomerase|dna topoisomerase}}
+
{{#set: ec-number=ec-3.4.25.1}}
−
{{#set: ec-number=ec-5.99.1.2}}
+
{{#set: nb gene associated=37}}
−
{{#set: nb gene associated=12}}
 
 
{{#set: nb pathway associated=0}}
 
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:18, 18 March 2021

Reaction 3.4.25.1-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=3.4.25.1-RXN&oldid=140066"