Difference between revisions of "3.4.25.1-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.34-RXN 1.1.1.34-RXN] == * direction: ** reversible * common-name: ** hydroxymethylglutaryl-co...")
(Created page with "Category:reaction == Reaction 3.4.25.1-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/3.4.25.1 ec-3.4.25.1] == Reaction formula == * 1 [...")
 
(7 intermediate revisions by 3 users not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.34-RXN 1.1.1.34-RXN] ==
+
== Reaction 3.4.25.1-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
 
−
** hydroxymethylglutaryl-coa reductase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.34 ec-1.1.1.34]
+
** [http://enzyme.expasy.org/EC/3.4.25.1 ec-3.4.25.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CO-A]][c] '''+''' 1 [[MEVALONATE]][c] '''+''' 2 [[NADP]][c] '''<=>''' 1 [[3-HYDROXY-3-METHYL-GLUTARYL-COA]][c] '''+''' 2 [[NADPH]][c] '''+''' 2 [[PROTON]][c]
+
* 1 [[General-Protein-Substrates]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Peptides-holder]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ18779]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ19380]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ21371]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ03239]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ05254]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ05154]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ01422]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ20471]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ22206]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ14598]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07403]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ01745]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ01731]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ19146]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ13891]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ18136]]
+
* Gene: [[SJ22180]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ02909]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ07036]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ19736]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ21105]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ21621]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ20307]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ05150]]
+
* Gene: [[SJ14712]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ10772]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ00010]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ08098]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ07149]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ08597]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ16267]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ13417]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ20163]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ10684]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ01580]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ19500]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ07129]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ00759]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ11002]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ18021]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-922]], mevalonate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-922 PWY-922]
 
−
** '''7''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-6174]], mevalonate pathway II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6174 PWY-6174]
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7391]], isoprene biosynthesis II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7391 PWY-7391]
 
−
** '''7''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-7524]], mevalonate pathway III (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7524 PWY-7524]
 
−
** '''5''' reactions found over '''8''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15992 15992]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R02082 R02082]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P16393 P16393]
+
** [http://www.uniprot.org/uniprot/Q7DLR9 Q7DLR9]
−
** [http://www.uniprot.org/uniprot/P14891 P14891]
+
** [http://www.uniprot.org/uniprot/P28062 P28062]
−
** [http://www.uniprot.org/uniprot/P16237 P16237]
+
** [http://www.uniprot.org/uniprot/Q9TRJ7 Q9TRJ7]
−
** [http://www.uniprot.org/uniprot/P20715 P20715]
+
** [http://www.uniprot.org/uniprot/P30656 P30656]
−
** [http://www.uniprot.org/uniprot/Q59468 Q59468]
+
** [http://www.uniprot.org/uniprot/P30657 P30657]
−
** [http://www.uniprot.org/uniprot/Q01237 Q01237]
+
** [http://www.uniprot.org/uniprot/P28074 P28074]
−
** [http://www.uniprot.org/uniprot/Q61671 Q61671]
+
** [http://www.uniprot.org/uniprot/P40302 P40302]
−
** [http://www.uniprot.org/uniprot/Q944T9 Q944T9]
+
** [http://www.uniprot.org/uniprot/O24633 O24633]
−
** [http://www.uniprot.org/uniprot/Q9S9C2 Q9S9C2]
+
** [http://www.uniprot.org/uniprot/P40303 P40303]
−
** [http://www.uniprot.org/uniprot/Q9S999 Q9S999]
+
** [http://www.uniprot.org/uniprot/Q9V122 Q9V122]
−
** [http://www.uniprot.org/uniprot/Q9S998 Q9S998]
+
** [http://www.uniprot.org/uniprot/P40306 P40306]
−
** [http://www.uniprot.org/uniprot/Q9S997 Q9S997]
+
** [http://www.uniprot.org/uniprot/P28063 P28063]
−
** [http://www.uniprot.org/uniprot/P04035 P04035]
+
** [http://www.uniprot.org/uniprot/P25786 P25786]
−
** [http://www.uniprot.org/uniprot/P00347 P00347]
+
** [http://www.uniprot.org/uniprot/P28076 P28076]
−
** [http://www.uniprot.org/uniprot/P29058 P29058]
+
** [http://www.uniprot.org/uniprot/O13268 O13268]
−
** [http://www.uniprot.org/uniprot/P29057 P29057]
+
** [http://www.uniprot.org/uniprot/P34064 P34064]
−
** [http://www.uniprot.org/uniprot/Q12577 Q12577]
+
** [http://www.uniprot.org/uniprot/P60901 P60901]
−
** [http://www.uniprot.org/uniprot/Q12649 Q12649]
+
** [http://www.uniprot.org/uniprot/P18421 P18421]
−
** [http://www.uniprot.org/uniprot/Q00583 Q00583]
+
** [http://www.uniprot.org/uniprot/P18053 P18053]
−
** [http://www.uniprot.org/uniprot/Q01559 Q01559]
+
** [http://www.uniprot.org/uniprot/P28072 P28072]
−
** [http://www.uniprot.org/uniprot/P48022 P48022]
+
** [http://www.uniprot.org/uniprot/P22769 P22769]
−
** [http://www.uniprot.org/uniprot/Q43825 Q43825]
+
** [http://www.uniprot.org/uniprot/P25043 P25043]
−
** [http://www.uniprot.org/uniprot/Q43826 Q43826]
+
** [http://www.uniprot.org/uniprot/P28065 P28065]
−
** [http://www.uniprot.org/uniprot/P14773 P14773]
+
** [http://www.uniprot.org/uniprot/P30186 P30186]
−
** [http://www.uniprot.org/uniprot/Q7M4W2 Q7M4W2]
+
** [http://www.uniprot.org/uniprot/P60900 P60900]
−
** [http://www.uniprot.org/uniprot/Q7M4W1 Q7M4W1]
+
** [http://www.uniprot.org/uniprot/P34065 P34065]
−
** [http://www.uniprot.org/uniprot/Q7M4W4 Q7M4W4]
+
** [http://www.uniprot.org/uniprot/P34067 P34067]
−
** [http://www.uniprot.org/uniprot/Q7M4W3 Q7M4W3]
+
** [http://www.uniprot.org/uniprot/P40301 P40301]
−
** [http://www.uniprot.org/uniprot/P48019 P48019]
+
** [http://www.uniprot.org/uniprot/Q8AVD2 Q8AVD2]
−
** [http://www.uniprot.org/uniprot/Q41454 Q41454]
+
** [http://www.uniprot.org/uniprot/Q7LZF1 Q7LZF1]
−
** [http://www.uniprot.org/uniprot/Q42506 Q42506]
+
** [http://www.uniprot.org/uniprot/P40307 P40307]
−
** [http://www.uniprot.org/uniprot/Q41455 Q41455]
+
** [http://www.uniprot.org/uniprot/P23724 P23724]
−
** [http://www.uniprot.org/uniprot/Q41456 Q41456]
+
** [http://www.uniprot.org/uniprot/P28070 P28070]
−
** [http://www.uniprot.org/uniprot/Q41458 Q41458]
+
** [http://www.uniprot.org/uniprot/P22141 P22141]
−
** [http://www.uniprot.org/uniprot/P48020 P48020]
+
** [http://www.uniprot.org/uniprot/P49721 P49721]
−
** [http://www.uniprot.org/uniprot/Q9FS01 Q9FS01]
+
** [http://www.uniprot.org/uniprot/P49720 P49720]
−
** [http://www.uniprot.org/uniprot/Q42466 Q42466]
+
** [http://www.uniprot.org/uniprot/P25156 P25156]
−
** [http://www.uniprot.org/uniprot/O48624 O48624]
+
** [http://www.uniprot.org/uniprot/Q09682 Q09682]
−
** [http://www.uniprot.org/uniprot/O04188 O04188]
+
** [http://www.uniprot.org/uniprot/Q09720 Q09720]
−
** [http://www.uniprot.org/uniprot/O24594 O24594]
+
** [http://www.uniprot.org/uniprot/P48004 P48004]
−
** [http://www.uniprot.org/uniprot/Q41438 Q41438]
+
** [http://www.uniprot.org/uniprot/P38624 P38624]
−
** [http://www.uniprot.org/uniprot/O64966 O64966]
+
** [http://www.uniprot.org/uniprot/P32379 P32379]
−
** [http://www.uniprot.org/uniprot/O64967 O64967]
+
** [http://www.uniprot.org/uniprot/Q7LZF0 Q7LZF0]
−
** [http://www.uniprot.org/uniprot/Q03163 Q03163]
+
** [http://www.uniprot.org/uniprot/P62333 P62333]
−
** [http://www.uniprot.org/uniprot/Q39628 Q39628]
+
** [http://www.uniprot.org/uniprot/Q24178 Q24178]
−
** [http://www.uniprot.org/uniprot/P93514 P93514]
+
** [http://www.uniprot.org/uniprot/Q27575 Q27575]
−
** [http://www.uniprot.org/uniprot/O08424 O08424]
+
** [http://www.uniprot.org/uniprot/P21242 P21242]
 +
** [http://www.uniprot.org/uniprot/P21243 P21243]
 +
** [http://www.uniprot.org/uniprot/P23638 P23638]
 +
** [http://www.uniprot.org/uniprot/P23639 P23639]
 +
** [http://www.uniprot.org/uniprot/P12881 P12881]
 +
** [http://www.uniprot.org/uniprot/P25787 P25787]
 +
** [http://www.uniprot.org/uniprot/P20618 P20618]
 +
** [http://www.uniprot.org/uniprot/P25788 P25788]
 +
** [http://www.uniprot.org/uniprot/P25789 P25789]
 +
** [http://www.uniprot.org/uniprot/P18420 P18420]
 +
** [http://www.uniprot.org/uniprot/P18422 P18422]
 +
** [http://www.uniprot.org/uniprot/P21670 P21670]
 +
** [http://www.uniprot.org/uniprot/P52428 P52428]
 +
** [http://www.uniprot.org/uniprot/P93395 P93395]
 +
** [http://www.uniprot.org/uniprot/O04861 O04861]
 +
** [http://www.uniprot.org/uniprot/Q8LD27 Q8LD27]
 +
** [http://www.uniprot.org/uniprot/O48551 O48551]
 +
** [http://www.uniprot.org/uniprot/O24030 O24030]
 +
** [http://www.uniprot.org/uniprot/P42742 P42742]
 +
** [http://www.uniprot.org/uniprot/O81147 O81147]
 +
** [http://www.uniprot.org/uniprot/O23708 O23708]
 +
** [http://www.uniprot.org/uniprot/O24616 O24616]
 +
** [http://www.uniprot.org/uniprot/O81149 O81149]
 +
** [http://www.uniprot.org/uniprot/Q42134 Q42134]
 +
** [http://www.uniprot.org/uniprot/P34066 P34066]
 +
** [http://www.uniprot.org/uniprot/O23712 O23712]
 +
** [http://www.uniprot.org/uniprot/O23710 O23710]
 +
** [http://www.uniprot.org/uniprot/Q7DLS1 Q7DLS1]
 +
** [http://www.uniprot.org/uniprot/O81153 O81153]
 +
** [http://www.uniprot.org/uniprot/O23714 O23714]
 
</div>
 
</div>
−
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
−
{{#set: common-name=hydroxymethylglutaryl-coa reductase}}
+
{{#set: ec-number=ec-3.4.25.1}}
−
{{#set: ec-number=ec-1.1.1.34}}
+
{{#set: nb gene associated=37}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb pathway associated=0}}
−
{{#set: nb pathway associated=4}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:18, 18 March 2021

Reaction 3.4.25.1-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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