Difference between revisions of "3.5.1.88-RXN"

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(Created page with "Category:reaction == Reaction INORGPYROPHOSPHAT-RXN == * direction: ** left-to-right * common-name: ** inorganic pyrophosphatase ** inorganic diphosphatase * ec-number: **...")
(Created page with "Category:reaction == Reaction RXN-7644 == * direction: ** reversible * common-name: ** d-sorbitol 2-dehydrogenase ** sorbitol dehydrogenase * ec-number: ** [http://enzyme....")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction INORGPYROPHOSPHAT-RXN ==
+
== Reaction RXN-7644 ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** inorganic pyrophosphatase
+
** d-sorbitol 2-dehydrogenase
−
** inorganic diphosphatase
+
** sorbitol dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.6.1.1 ec-3.6.1.1]
+
** [http://enzyme.expasy.org/EC/1.1.1.14 ec-1.1.1.14]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PPI]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 2 [[Pi]][c]
+
* 1 [[NAD]][c] '''+''' 1 [[SORBITOL]][c] '''<=>''' 1 [[CPD-15382]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ17488]]
−
* Gene: [[SJ11426]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ11196]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ06186]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07746]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ19856]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ19765]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ09890]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ10687]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ17386]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ17098]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ17991]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ21090]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7805]], (aminomethyl)phosphonate degradation:
+
* [[PWY-4101]], D-sorbitol degradation I:
−
** '''2''' reactions found over '''8''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-7807]], glyphosate degradation III:
 
−
** '''2''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24576 24576]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=33034 33034]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00004 R00004]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00875 R00875]
−
* UNIPROT:
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/P21616 P21616]
+
{{#set: common-name=d-sorbitol 2-dehydrogenase|sorbitol dehydrogenase}}
−
** [http://www.uniprot.org/uniprot/P31414 P31414]
+
{{#set: ec-number=ec-1.1.1.14}}
−
** [http://www.uniprot.org/uniprot/P28239 P28239]
+
{{#set: nb gene associated=1}}
−
** [http://www.uniprot.org/uniprot/P37980 P37980]
+
{{#set: nb pathway associated=1}}
−
** [http://www.uniprot.org/uniprot/P84491 P84491]
 
−
** [http://www.uniprot.org/uniprot/O59570 O59570]
 
−
** [http://www.uniprot.org/uniprot/Q9S941 Q9S941]
 
−
** [http://www.uniprot.org/uniprot/Q9S939 Q9S939]
 
−
** [http://www.uniprot.org/uniprot/Q9S936 Q9S936]
 
−
** [http://www.uniprot.org/uniprot/O26363 O26363]
 
−
** [http://www.uniprot.org/uniprot/Q9S940 Q9S940]
 
−
** [http://www.uniprot.org/uniprot/Q9S938 Q9S938]
 
−
** [http://www.uniprot.org/uniprot/Q9S937 Q9S937]
 
−
** [http://www.uniprot.org/uniprot/Q9PHM9 Q9PHM9]
 
−
** [http://www.uniprot.org/uniprot/Q9UY24 Q9UY24]
 
−
** [http://www.uniprot.org/uniprot/Q9JVG3 Q9JVG3]
 
−
** [http://www.uniprot.org/uniprot/P47593 P47593]
 
−
** [http://www.uniprot.org/uniprot/Q974Y8 Q974Y8]
 
−
** [http://www.uniprot.org/uniprot/O05724 O05724]
 
−
** [http://www.uniprot.org/uniprot/P19514 P19514]
 
−
** [http://www.uniprot.org/uniprot/P00817 P00817]
 
−
** [http://www.uniprot.org/uniprot/P0A7A9 P0A7A9]
 
−
** [http://www.uniprot.org/uniprot/P13998 P13998]
 
−
** [http://www.uniprot.org/uniprot/P19117 P19117]
 
−
** [http://www.uniprot.org/uniprot/P21216 P21216]
 
−
** [http://www.uniprot.org/uniprot/Q9R5T3 Q9R5T3]
 
−
** [http://www.uniprot.org/uniprot/P37981 P37981]
 
−
** [http://www.uniprot.org/uniprot/Q43801 Q43801]
 
−
** [http://www.uniprot.org/uniprot/Q43798 Q43798]
 
−
** [http://www.uniprot.org/uniprot/Q43797 Q43797]
 
−
** [http://www.uniprot.org/uniprot/P50308 P50308]
 
−
** [http://www.uniprot.org/uniprot/Q43796 Q43796]
 
−
** [http://www.uniprot.org/uniprot/P93409 P93409]
 
−
** [http://www.uniprot.org/uniprot/Q8H616 Q8H616]
 
−
** [http://www.uniprot.org/uniprot/P93410 P93410]
 
−
** [http://www.uniprot.org/uniprot/P75250 P75250]
 
−
** [http://www.uniprot.org/uniprot/Q49071 Q49071]
 
−
** [http://www.uniprot.org/uniprot/O48556 O48556]
 
−
** [http://www.uniprot.org/uniprot/O22537 O22537]
 
−
** [http://www.uniprot.org/uniprot/O82793 O82793]
 
−
** [http://www.uniprot.org/uniprot/O23979 O23979]
 
−
** [http://www.uniprot.org/uniprot/O49949 O49949]
 
−
** [http://www.uniprot.org/uniprot/Q43187 Q43187]
 
−
** [http://www.uniprot.org/uniprot/O22124 O22124]
 
−
** [http://www.uniprot.org/uniprot/Q42650 Q42650]
 
−
** [http://www.uniprot.org/uniprot/Q42651 Q42651]
 
−
** [http://www.uniprot.org/uniprot/O65151 O65151]
 
−
</div>
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=inorganic diphosphatase|inorganic pyrophosphatase}}
 
−
{{#set: ec-number=ec-3.6.1.1}}
 
−
{{#set: nb gene associated=12}}
 
−
{{#set: nb pathway associated=2}}
 
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 11:25, 15 January 2021

Reaction RXN-7644

  • direction:
    • reversible
  • common-name:
    • d-sorbitol 2-dehydrogenase
    • sorbitol dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-4101, D-sorbitol degradation I:
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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