Difference between revisions of "3.6.4.4-RXN"

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(Created page with "Category:reaction == Reaction DXS-RXN == * direction: ** left-to-right * common-name: ** 1-deoxy-d-xylulose-5-phosphate synthase ** 1-deoxyxylulose-5-phosphate synthase *...")
(Created page with "Category:reaction == Reaction RXN-3661 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.14.12.23 ec-1.14.12.23] == Reaction formula == * 1 [...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DXS-RXN ==
+
== Reaction RXN-3661 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** 1-deoxy-d-xylulose-5-phosphate synthase
 
−
** 1-deoxyxylulose-5-phosphate synthase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.2.1.7 ec-2.2.1.7]
+
** [http://enzyme.expasy.org/EC/1.14.12.23 ec-1.14.12.23]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GAP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PYRUVATE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[DEOXYXYLULOSE-5P]][c]
+
* 1 [[BENZENE-NO2]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CATECHOL]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[NITRITE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ15200]]
+
* Gene: [[SJ09087]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ11355]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ05072]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ11348]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ11349]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ05110]]
 +
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ12529]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6891]], thiazole biosynthesis II (aerobic bacteria):
+
* [[PWY-5640]], nitrobenzene degradation II:
−
** '''4''' reactions found over '''7''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[PWY-6892]], thiazole biosynthesis I (facultative anaerobic bacteria):
 
−
** '''5''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PYRIDOXSYN-PWY]], pyridoxal 5'-phosphate biosynthesis I:
 
−
** '''3''' reactions found over '''7''' reactions in the full pathway
 
−
* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I:
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7560]], methylerythritol phosphate pathway II:
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12606 12606]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=46509 46509]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05636 R05636]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07706 R07706]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=1-deoxyxylulose-5-phosphate synthase|1-deoxy-d-xylulose-5-phosphate synthase}}
+
{{#set: ec-number=ec-1.14.12.23}}
−
{{#set: ec-number=ec-2.2.1.7}}
+
{{#set: nb gene associated=6}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb pathway associated=1}}
−
{{#set: nb pathway associated=5}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus}}

Revision as of 13:15, 14 January 2021

Reaction RXN-3661

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5640, nitrobenzene degradation II:
    • 1 reactions found over 1 reactions in the full pathway

Reconstruction information

External links





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