Difference between revisions of "3.6.4.6-RXN"

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(Created page with "Category:reaction == Reaction RXN-8409 == * direction: ** left-to-right * common-name: ** prenylcysteine methylesterase * ec-number: ** [http://enzyme.expasy.org/EC/3.1.1...")
(Created page with "Category:reaction == Reaction 4.2.1.61-RXN == * direction: ** left-to-right * common-name: ** fatty acid synthase ** (3r)-3-hydroxypalmitoyl-[acyl-carrier protein] dehydra...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-8409 ==
+
== Reaction 4.2.1.61-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** prenylcysteine methylesterase
+
** fatty acid synthase
 +
** (3r)-3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.1 ec-3.1.1]
+
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
 +
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/4.2.1.59 ec-4.2.1.59]
 +
* synonymous:
 +
** (3r)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase
 +
** (3r)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase (hexadec-2-enoyl-[acyl-carrier protein]-forming)
 +
** β-hydroxypalmityl-acp dehydrase
 +
** β-hydroxypalmitoyl thioester dehydratase
 +
** d-3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase
 +
** β-hydroxypalmitoyl-acyl carrier protein dehydrase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PROTEIN-C-TERMINAL-S-FARNESYL-L-CYSTEINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[METOH]][c] '''+''' 1 [[PROTEIN-C-TERMINAL-S-ETC-CYSTEINE]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[R-3-Hydroxypalmitoyl-ACPs]][c] '''=>''' 1 [[2-Hexadecenoyl-ACPs]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ19121]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ04769]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ10275]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ15983]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ04443]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06944]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06617]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ13014]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ03883]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ18059]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ19629]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ00320]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06616]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ11672]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ00613]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ10624]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ17743]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5971]], palmitate biosynthesis (type II fatty acid synthase):
 +
** '''31''' reactions found over '''31''' reactions in the full pathway
 +
* [[PWY-5994]], palmitate biosynthesis (type I fatty acid synthase):
 +
** '''31''' reactions found over '''31''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* METANETX-RXN : MNXR115600
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=48521 48521]
+
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R04462 R04462]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P49327 P49327]
 +
** [http://www.uniprot.org/uniprot/P07149 P07149]
 +
** [http://www.uniprot.org/uniprot/P12276 P12276]
 +
** [http://www.uniprot.org/uniprot/P12785 P12785]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=prenylcysteine methylesterase}}
+
{{#set: common-name=fatty acid synthase|(3r)-3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase}}
−
{{#set: ec-number=ec-3.1.1}}
+
{{#set: ec-number=ec-2.3.1.85|ec-4.2.1.59|ec-2.3.1.86}}
−
{{#set: nb gene associated=1}}
+
{{#set: synonymous=&beta;-hydroxypalmityl-acp dehydrase|(3r)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase|(3r)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase (hexadec-2-enoyl-[acyl-carrier protein]-forming)|&beta;-hydroxypalmitoyl thioester dehydratase|d-3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase|&beta;-hydroxypalmitoyl-acyl carrier protein dehydrase}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb gene associated=16}}
 +
{{#set: nb pathway associated=2}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 08:38, 15 March 2021

Reaction 4.2.1.61-RXN

  • direction:
    • left-to-right
  • common-name:
    • fatty acid synthase
    • (3r)-3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase
  • ec-number:
  • synonymous:
    • (3r)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase
    • (3r)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase (hexadec-2-enoyl-[acyl-carrier protein]-forming)
    • β-hydroxypalmityl-acp dehydrase
    • β-hydroxypalmitoyl thioester dehydratase
    • d-3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase
    • β-hydroxypalmitoyl-acyl carrier protein dehydrase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5971, palmitate biosynthesis (type II fatty acid synthase):
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-5994, palmitate biosynthesis (type I fatty acid synthase):
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

Property "Common-name" (as page type) with input value "(3r)-3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

  • Property "Synonymous" (as page type) with input value "(3r)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
  • Property "Synonymous" (as page type) with input value "(3r)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase (hexadec-2-enoyl-[acyl-carrier protein]-forming)" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
  • Property "Synonymous" (as page type) with input value "d-3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.




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