Difference between revisions of "325-BISPHOSPHATE-NUCLEOTIDASE-RXN"

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(Created page with "Category:reaction == Reaction 1.14.11.1-RXN == * direction: ** left-to-right * common-name: ** γ-butyrobetaine dioxygenase * ec-number: ** [http://enzyme.expasy.org/...")
(Created page with "Category:reaction == Reaction 325-BISPHOSPHATE-NUCLEOTIDASE-RXN == * direction: ** left-to-right * common-name: ** 3'(2'),5'-bisphosphate nucleotidase ** adenosine-3'(2'),...")
 
(One intermediate revision by the same user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 1.14.11.1-RXN ==
+
== Reaction 325-BISPHOSPHATE-NUCLEOTIDASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** γ-butyrobetaine dioxygenase
+
** 3'(2'),5'-bisphosphate nucleotidase
 +
** adenosine-3'(2'),5'-bisphosphate nucleotidase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.14.11.1 ec-1.14.11.1]
+
** [http://enzyme.expasy.org/EC/3.1.3.7 ec-3.1.3.7]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[GAMMA-BUTYROBETAINE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CARNITINE]][c] '''+''' 1 [[SUC]][c]
+
* 1 [[3-5-ADP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ01929]]
+
* Gene: [[SJ11258]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ11793]]
+
* Gene: [[SJ15444]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ01883]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ05836]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ01133]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6100]], L-carnitine biosynthesis:
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-3621]], γ-butyrobetaine degradation:
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR96321
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24029 24029]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10041 10041]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02397 R02397]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00188 R00188]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q40639 Q40639]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=γ-butyrobetaine dioxygenase}}
+
{{#set: common-name=3'(2'),5'-bisphosphate nucleotidase|adenosine-3'(2'),5'-bisphosphate nucleotidase}}
−
{{#set: ec-number=ec-1.14.11.1}}
+
{{#set: ec-number=ec-3.1.3.7}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=4}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}

Latest revision as of 11:18, 18 March 2021

Reaction 325-BISPHOSPHATE-NUCLEOTIDASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • 3'(2'),5'-bisphosphate nucleotidase
    • adenosine-3'(2'),5'-bisphosphate nucleotidase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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