Difference between revisions of "325-BISPHOSPHATE-NUCLEOTIDASE-RXN"

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(Created page with "Category:reaction == Reaction RXN-9679 == * direction: ** left-to-right * common-name: ** sarcosine n-methyltransferase ** sarcosine-dimethylglycine methyltransferase * sy...")
(Created page with "Category:reaction == Reaction 325-BISPHOSPHATE-NUCLEOTIDASE-RXN == * direction: ** left-to-right * common-name: ** 3'(2'),5'-bisphosphate nucleotidase ** adenosine-3'(2'),...")
 
(3 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-9679 ==
+
== Reaction 325-BISPHOSPHATE-NUCLEOTIDASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** sarcosine n-methyltransferase
+
** 3'(2'),5'-bisphosphate nucleotidase
−
** sarcosine-dimethylglycine methyltransferase
+
** adenosine-3'(2'),5'-bisphosphate nucleotidase
−
* synonymous:
+
* ec-number:
−
** sarcosine dimethylglycine n-methyltransferase
+
** [http://enzyme.expasy.org/EC/3.1.3.7 ec-3.1.3.7]
−
** glycine sarcosine n-methyltransferase
 
−
** s-adenosyl-l-methionine:n,n-dimethylglycine n-methyltransferase
 
−
** gsdmt
 
−
** apdmt
 
−
** s-adenosyl-l-methionine:sarcosine n-methyltransferase
 
−
** glycine-sarcosine methyltransferase
 
−
** gmt
 
−
** glycine sarcosine dimethylglycine n-methyltransferase
 
−
** sdmt
 
−
** gsmt
 
−
** apgsmt
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[SARCOSINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[DIMETHYL-GLYCINE]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[3-5-ADP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ11258]]
−
* Gene: [[SJ11087]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ12128]]
+
* Gene: [[SJ15444]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ02540]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ05836]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ02539]]
+
* Gene: [[SJ01133]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ12119]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ10116]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ12116]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ03081]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ18177]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ12118]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ14716]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[P541-PWY]], glycine betaine biosynthesis IV (from glycine):
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6004]], glycine betaine biosynthesis V (from glycine):
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR96321
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10041 10041]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07243 R07243]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00188 R00188]
−
* RHEA:
+
* UNIPROT:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15454 15454]
+
** [http://www.uniprot.org/uniprot/Q40639 Q40639]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=sarcosine n-methyltransferase|sarcosine-dimethylglycine methyltransferase}}
+
{{#set: common-name=3'(2'),5'-bisphosphate nucleotidase|adenosine-3'(2'),5'-bisphosphate nucleotidase}}
−
{{#set: synonymous=gmt|gsdmt|apgsmt|s-adenosyl-l-methionine:n,n-dimethylglycine n-methyltransferase|s-adenosyl-l-methionine:sarcosine n-methyltransferase|glycine sarcosine dimethylglycine n-methyltransferase|sarcosine dimethylglycine n-methyltransferase|sdmt|glycine-sarcosine methyltransferase|glycine sarcosine n-methyltransferase|gsmt|apdmt}}
+
{{#set: ec-number=ec-3.1.3.7}}
−
{{#set: nb gene associated=11}}
+
{{#set: nb gene associated=4}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}

Latest revision as of 11:18, 18 March 2021

Reaction 325-BISPHOSPHATE-NUCLEOTIDASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • 3'(2'),5'-bisphosphate nucleotidase
    • adenosine-3'(2'),5'-bisphosphate nucleotidase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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