Difference between revisions of "35-CYCLIC-GMP-PHOSPHODIESTERASE-RXN"

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(Created page with "Category:reaction == Reaction GCVT-RXN == * direction: ** reversible * common-name: ** aminomethyltransferase * ec-number: ** [http://enzyme.expasy.org/EC/2.1.2.10 ec-2.1....")
(Created page with "Category:reaction == Reaction 35-CYCLIC-GMP-PHOSPHODIESTERASE-RXN == * direction: ** left-to-right * common-name: ** 3',5'-cyclic-gmp phosphodiesterase * ec-number: ** [ht...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GCVT-RXN ==
+
== Reaction 35-CYCLIC-GMP-PHOSPHODIESTERASE-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** aminomethyltransferase
+
** 3',5'-cyclic-gmp phosphodiesterase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.1.2.10 ec-2.1.2.10]
+
** [http://enzyme.expasy.org/EC/3.1.4.35 ec-3.1.4.35]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[AMINOMETHYLDIHYDROLIPOYL-GCVH]][c] '''+''' 1 [[THF-GLU-N]][c] '''<=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[DIHYDROLIPOYL-GCVH]][c] '''+''' 1 [[METHYLENE-THF-GLU-N]][c]
+
* 1 [[CGMP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[GMP]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ16345]]
+
* Gene: [[SJ18680]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ19914]]
+
* Gene: [[SJ14526]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ08557]]
+
* Gene: [[SJ09726]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[GLYCLEAV-PWY]], glycine cleavage:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* METANETX-RXN : MNXR115909
+
* METANETX-RXN : MNXR100078
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16958 16958]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04125 R04125]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01234 R01234]
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16945 16945]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P25285 P25285]
+
** [http://www.uniprot.org/uniprot/P04972 P04972]
−
** [http://www.uniprot.org/uniprot/P28337 P28337]
+
** [http://www.uniprot.org/uniprot/P16586 P16586]
−
** [http://www.uniprot.org/uniprot/P27248 P27248]
+
** [http://www.uniprot.org/uniprot/P23439 P23439]
−
** [http://www.uniprot.org/uniprot/Q9UZP8 Q9UZP8]
+
** [http://www.uniprot.org/uniprot/P35913 P35913]
−
** [http://www.uniprot.org/uniprot/Q9JVP2 Q9JVP2]
+
** [http://www.uniprot.org/uniprot/P33726 P33726]
−
** [http://www.uniprot.org/uniprot/P48728 P48728]
+
** [http://www.uniprot.org/uniprot/P09174 P09174]
−
** [http://www.uniprot.org/uniprot/P49364 P49364]
+
** [http://www.uniprot.org/uniprot/P52731 P52731]
−
** [http://www.uniprot.org/uniprot/P49095 P49095]
+
** [http://www.uniprot.org/uniprot/P51160 P51160]
−
** [http://www.uniprot.org/uniprot/P49363 P49363]
+
** [http://www.uniprot.org/uniprot/P18545 P18545]
−
** [http://www.uniprot.org/uniprot/P54260 P54260]
+
** [http://www.uniprot.org/uniprot/O76074 O76074]
−
** [http://www.uniprot.org/uniprot/P49361 P49361]
+
** [http://www.uniprot.org/uniprot/P11541 P11541]
−
** [http://www.uniprot.org/uniprot/P49362 P49362]
+
** [http://www.uniprot.org/uniprot/P27664 P27664]
−
** [http://www.uniprot.org/uniprot/O49954 O49954]
+
** [http://www.uniprot.org/uniprot/Q62037 Q62037]
−
** [http://www.uniprot.org/uniprot/P93256 P93256]
+
** [http://www.uniprot.org/uniprot/P23440 P23440]
−
** [http://www.uniprot.org/uniprot/O32955 O32955]
 
 
</div>
 
</div>
−
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
−
{{#set: common-name=aminomethyltransferase}}
+
{{#set: common-name=3',5'-cyclic-gmp phosphodiesterase}}
−
{{#set: ec-number=ec-2.1.2.10}}
+
{{#set: ec-number=ec-3.1.4.35}}
 
{{#set: nb gene associated=3}}
 
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction 35-CYCLIC-GMP-PHOSPHODIESTERASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • 3',5'-cyclic-gmp phosphodiesterase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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