Difference between revisions of "4.1.3.17-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction ADENYLYLSULFATE-REDUCTASE-RXN == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/EC/1.8.99.2 ec-1.8.99.2] == Reaction fo...")
(Created page with "Category:reaction == Reaction RXN-12669 == * direction: ** left-to-right * common-name: ** acyl-coa oxidase * ec-number: ** [http://enzyme.expasy.org/EC/1.3.3.6 ec-1.3.3.6...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ADENYLYLSULFATE-REDUCTASE-RXN ==
+
== Reaction RXN-12669 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 +
* common-name:
 +
** acyl-coa oxidase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.8.99.2 ec-1.8.99.2]
+
** [http://enzyme.expasy.org/EC/1.3.3.6 ec-1.3.3.6]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[AMP]][c] '''+''' 1 [[Acceptor]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[SO3]][c] '''<=>''' 1 [[APS]][c] '''+''' 1 [[Donor-H2]][c]
+
* 1 [[CPD-196]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CPD0-2108]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ13468]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ03090]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ07451]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ19669]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07452]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[DISSULFRED-PWY]], dissimilatory sulfate reduction I (to hydrogen sufide)):
+
* [[PWY-6920]], 6-gingerol analog biosynthesis (engineered):
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''5''' reactions found over '''6''' reactions in the full pathway
−
* [[P224-PWY]], dissimilatory sulfate reduction II (to thiosulfate):
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5278]], sulfite oxidation III:
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-5279]], sulfite oxidation II:
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=left-to-right}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24243 24243]
+
{{#set: common-name=acyl-coa oxidase}}
−
* LIGAND-RXN:
+
{{#set: ec-number=ec-1.3.3.6}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00860 R00860]
+
{{#set: nb gene associated=5}}
−
* UNIPROT:
+
{{#set: nb pathway associated=1}}
−
** [http://www.uniprot.org/uniprot/O28604 O28604]
+
{{#set: reconstruction category=annotation|orthology}}
−
** [http://www.uniprot.org/uniprot/O28603 O28603]
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
−
{{#set: direction=reversible}}
+
{{#set: reconstruction comment=n.a}}
−
{{#set: ec-number=ec-1.8.99.2}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
−
{{#set: nb gene associated=0}}
 
−
{{#set: nb pathway associated=4}}
 
−
{{#set: reconstruction category=gap-filling}}
 
−
{{#set: reconstruction tool=meneco}}
 
−
{{#set: reconstruction comment=added for gapfilling}}
 
−
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
 

Revision as of 15:06, 5 January 2021

Reaction RXN-12669

  • direction:
    • left-to-right
  • common-name:
    • acyl-coa oxidase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6920, 6-gingerol analog biosynthesis (engineered):
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=4.1.3.17-RXN&oldid=64323"