Difference between revisions of "4.1.99.4-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMELATE-DEHYDROGENASE-RXN DIAMINOPIMELATE-DEHYDROGENASE-RXN] == * direction: ** reversible...")
(Created page with "Category:reaction == Reaction RXN-11841 == * direction: ** left-to-right * common-name: ** trna pseudouridine13 synthase * ec-number: ** [http://enzyme.expasy.org/EC/5.4.9...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMELATE-DEHYDROGENASE-RXN DIAMINOPIMELATE-DEHYDROGENASE-RXN] ==
+
== Reaction RXN-11841 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 +
* common-name:
 +
** trna pseudouridine13 synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.4.1.16 ec-1.4.1.16]
+
** [http://enzyme.expasy.org/EC/5.4.99.27 ec-5.4.99.27]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[MESO-DIAMINOPIMELATE]][c] '''+''' 1 [[NADP]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[L-ALPHA-AMINO-EPSILON-KETO-PIMELATE]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[tRNA-uridine13]][c] '''=>''' 1 [[tRNA-pseudouridine13]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ00580]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ03994]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ13453]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-2942]], L-lysine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2942 PWY-2942]
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[previous_meneco]]; tool: [[curation]]; comment: reaction added with meneco (previous version)
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13564 13564]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=42541 42541]
−
* LIGAND-RXN:
+
{{#set: direction=left-to-right}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R02755 R02755]
+
{{#set: common-name=trna pseudouridine13 synthase}}
−
* UNIPROT:
+
{{#set: ec-number=ec-5.4.99.27}}
−
** [http://www.uniprot.org/uniprot/P04964 P04964]
+
{{#set: nb gene associated=3}}
−
{{#set: direction=reversible}}
+
{{#set: nb pathway associated=0}}
−
{{#set: ec-number=ec-1.4.1.16}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: nb gene associated=0}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: nb pathway associated=1}}
+
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}
−
{{#set: reconstruction tool=curation}}
 
−
{{#set: reconstruction comment=reaction added with meneco (previous version)}}
 
−
{{#set: reconstruction source=previous_meneco}}
 

Revision as of 20:42, 18 December 2020

Reaction RXN-11841

  • direction:
    • left-to-right
  • common-name:
    • trna pseudouridine13 synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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