Difference between revisions of "4.2.99.18-RXN"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PYRIDOXSYN-PWY PYRIDOXSYN-PWY] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax...")
(Created page with "Category:reaction == Reaction 4.2.99.18-RXN == * direction: ** left-to-right * common-name: ** dna-(apurinic or apyrimidinic site) lyase ** dna-ap site lyase * ec-number:...")
 
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PYRIDOXSYN-PWY PYRIDOXSYN-PWY] ==
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== Reaction 4.2.99.18-RXN ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]
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** left-to-right
 
* common-name:
 
* common-name:
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** pyridoxal 5'-phosphate biosynthesis i
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** dna-(apurinic or apyrimidinic site) lyase
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== Reaction(s) found ==
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** dna-ap site lyase
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* [[DXS-RXN]]
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* ec-number:
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* [[PNPOXI-RXN]]
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** [http://enzyme.expasy.org/EC/4.2.99.18 ec-4.2.99.18]
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* [[PSERTRANSAMPYR-RXN]]
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== Reaction formula ==
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== Reaction(s) not found ==
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* 1 [[DNA-containing-abasic-Sites]][c] '''=>''' 1 [[3-terminal-unsaturated-sugars]][c] '''+''' 1 [[5-Phospho-terminated-DNAs]][c] '''+''' 1 [[PROTON]][c]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13179 RXN-13179]
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== Gene(s) associated with this reaction  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=ERYTHRON4PDEHYDROG-RXN ERYTHRON4PDEHYDROG-RXN]
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [http://metacyc.org/META/NEW-IMAGE?object=ERYTH4PDEHYDROG-RXN ERYTH4PDEHYDROG-RXN]
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* Gene: [[SJ01489]]
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* [http://metacyc.org/META/NEW-IMAGE?object=PDXJ-RXN PDXJ-RXN]
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** Category: [[annotation]]
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{{#set: taxonomic-range=tax-2}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: common-name=pyridoxal 5'-phosphate biosynthesis i}}
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* Gene: [[SJ00230]]
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{{#set: nb reaction found=3}}
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** Category: [[annotation]]
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{{#set: completion rate=0.43}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: nb total reaction=7}}
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* Gene: [[SJ12532]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ12275]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ12201]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ18415]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[SJ10690]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[SJ04992]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ04314]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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</div>
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== Pathway(s) ==
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== Reconstruction information  ==
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
== External links  ==
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* METANETX-RXN : MNXR115619
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P0AB83 P0AB83]
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** [http://www.uniprot.org/uniprot/P28352 P28352]
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** [http://www.uniprot.org/uniprot/Q58829 Q58829]
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** [http://www.uniprot.org/uniprot/Q9PHS1 Q9PHS1]
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** [http://www.uniprot.org/uniprot/Q9JVT0 Q9JVT0]
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** [http://www.uniprot.org/uniprot/Q9PNL1 Q9PNL1]
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** [http://www.uniprot.org/uniprot/P44319 P44319]
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** [http://www.uniprot.org/uniprot/Q9CGM5 Q9CGM5]
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** [http://www.uniprot.org/uniprot/P04418 P04418]
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** [http://www.uniprot.org/uniprot/P27695 P27695]
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** [http://www.uniprot.org/uniprot/P23196 P23196]
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** [http://www.uniprot.org/uniprot/P22936 P22936]
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** [http://www.uniprot.org/uniprot/P43138 P43138]
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** [http://www.uniprot.org/uniprot/P95945 P95945]
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** [http://www.uniprot.org/uniprot/P50525 P50525]
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{{#set: direction=left-to-right}}
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{{#set: common-name=dna-ap site lyase|dna-(apurinic or apyrimidinic site) lyase}}
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{{#set: ec-number=ec-4.2.99.18}}
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{{#set: nb gene associated=9}}
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{{#set: nb pathway associated=0}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction tool=pathwaytools|pantograph}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:21, 18 March 2021

Reaction 4.2.99.18-RXN

  • direction:
    • left-to-right
  • common-name:
    • dna-(apurinic or apyrimidinic site) lyase
    • dna-ap site lyase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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