Difference between revisions of "5-FORMYL-THF-CYCLO-LIGASE-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction DEHYDDEOXPHOSGALACT-ALDOL-RXN == * direction: ** reversible * common-name: ** 2-oxo-3-deoxygalactonate 6-phosphate aldolase * ec-number: ** [...")
(Created page with "Category:reaction == Reaction ADENODEAMIN-RXN == * direction: ** left-to-right * common-name: ** adenosine deaminase * ec-number: ** [http://enzyme.expasy.org/EC/3.5.4.4 e...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DEHYDDEOXPHOSGALACT-ALDOL-RXN ==
+
== Reaction ADENODEAMIN-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** 2-oxo-3-deoxygalactonate 6-phosphate aldolase
+
** adenosine deaminase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.2.55 ec-4.1.2.55]
+
** [http://enzyme.expasy.org/EC/3.5.4.4 ec-3.5.4.4]
−
** [http://enzyme.expasy.org/EC/4.1.2.21 ec-4.1.2.21]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DEHYDRO-DEOXY-GALACTONATE-PHOSPHATE]][c] '''<=>''' 1 [[GAP]][c] '''+''' 1 [[PYRUVATE]][c]
+
* 1 [[ADENOSINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[INOSINE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03464]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ22508]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ12082]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ17056]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ04837]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ11072]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ20035]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ10996]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7130]], L-glucose degradation:
+
* [[PWY-6611]], adenine and adenosine salvage V:
−
** '''1''' reactions found over '''7''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[GALACTCAT-PWY]], D-galactonate degradation:
+
* [[SALVADEHYPOX-PWY]], adenosine nucleotides degradation II:
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6609]], adenine and adenosine salvage III:
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY0-1296]], purine ribonucleosides degradation:
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24467 24467]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24408 24408]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01064 R01064]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01560 R01560]
−
{{#set: direction=reversible}}
+
* UNIPROT:
−
{{#set: common-name=2-oxo-3-deoxygalactonate 6-phosphate aldolase}}
+
** [http://www.uniprot.org/uniprot/P22333 P22333]
−
{{#set: ec-number=ec-4.1.2.55|ec-4.1.2.21}}
+
** [http://www.uniprot.org/uniprot/P00813 P00813]
−
{{#set: nb gene associated=1}}
+
** [http://www.uniprot.org/uniprot/P03958 P03958]
−
{{#set: nb pathway associated=2}}
+
** [http://www.uniprot.org/uniprot/Q9CIR9 Q9CIR9]
 +
** [http://www.uniprot.org/uniprot/P55266 P55266]
 +
** [http://www.uniprot.org/uniprot/P53984 P53984]
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=adenosine deaminase}}
 +
{{#set: ec-number=ec-3.5.4.4}}
 +
{{#set: nb gene associated=7}}
 +
{{#set: nb pathway associated=4}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 19:05, 14 January 2021

Reaction ADENODEAMIN-RXN

  • direction:
    • left-to-right
  • common-name:
    • adenosine deaminase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6611, adenine and adenosine salvage V:
    • 2 reactions found over 3 reactions in the full pathway
  • SALVADEHYPOX-PWY, adenosine nucleotides degradation II:
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6609, adenine and adenosine salvage III:
    • 4 reactions found over 4 reactions in the full pathway
  • PWY0-1296, purine ribonucleosides degradation:
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=5-FORMYL-THF-CYCLO-LIGASE-RXN&oldid=103161"