Difference between revisions of "5-FORMYL-THF-CYCLO-LIGASE-RXN"

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(Created page with "Category:reaction == Reaction RXN-14037 == * direction: ** reversible == Reaction formula == * 1 2-ACETO-LACTATE[c] '''+''' 1 THIAMINE-PYROPHOSPHATE[c] '''<=>''' 1...")
(Created page with "Category:reaction == Reaction 5-FORMYL-THF-CYCLO-LIGASE-RXN == * direction: ** left-to-right * common-name: ** 5-formyltetrahydrofolate cyclo-ligase * ec-number: ** [http:...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-14037 ==
+
== Reaction 5-FORMYL-THF-CYCLO-LIGASE-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 +
* common-name:
 +
** 5-formyltetrahydrofolate cyclo-ligase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/6.3.3.2 ec-6.3.3.2]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-ACETO-LACTATE]][c] '''+''' 1 [[THIAMINE-PYROPHOSPHATE]][c] '''<=>''' 1 [[2-ALPHA-HYDROXYETHYL-THPP]][c] '''+''' 1 [[PYRUVATE]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[N5-Formyl-THF-Glu-N]][c] '''=>''' 1 [[5-10-METHENYL-THF-GLU-N]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ19600]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ02064]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-2201]], folate transformations I:
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[1CMET2-PWY]], folate transformations III (E. coli):
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-3841]], folate transformations II (plants):
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR95883
+
* METANETX-RXN : MNXR115622
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10489 10489]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04672 R04672]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02301 R02301]
−
* RHEA:
+
* UNIPROT:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24808 24808]
+
** [http://www.uniprot.org/uniprot/P80405 P80405]
−
{{#set: direction=reversible}}
+
** [http://www.uniprot.org/uniprot/P49914 P49914]
−
{{#set: nb gene associated=0}}
+
{{#set: direction=left-to-right}}
−
{{#set: nb pathway associated=0}}
+
{{#set: common-name=5-formyltetrahydrofolate cyclo-ligase}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: ec-number=ec-6.3.3.2}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: nb gene associated=2}}
−
{{#set: reconstruction comment=added for gapfilling}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
+
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction 5-FORMYL-THF-CYCLO-LIGASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • 5-formyltetrahydrofolate cyclo-ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-2201, folate transformations I:
    • 9 reactions found over 10 reactions in the full pathway
  • 1CMET2-PWY, folate transformations III (E. coli):
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-3841, folate transformations II (plants):
    • 9 reactions found over 11 reactions in the full pathway

Reconstruction information

External links





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