Difference between revisions of "5-METHYL-THF"

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(Created page with "Category:gene == Gene SJ13207 == * transcription-direction: ** positive * right-end-position: ** 341187 * left-end-position: ** 336053 * centisome-position: ** 97.48522...")
 
(Created page with "Category:gene == Gene SJ04188 == * transcription-direction: ** negative * right-end-position: ** 12972 * left-end-position: ** 7855 * centisome-position: ** 7.1134896...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ13207 ==
+
== Gene SJ04188 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 341187
+
** 12972
 
* left-end-position:
 
* left-end-position:
−
** 336053
+
** 7855
 
* centisome-position:
 
* centisome-position:
−
** 97.48522    
+
** 7.1134896    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[ATPASE-RXN]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[2.6.1.57-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
+
* [[ASPAMINOTRANS-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-12195]]
+
* [[HISTAMINOTRANS-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-12196]]
+
* [[PHEAMINOTRANS-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN0-5462]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-10814]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-11737]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-13697]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-14147]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[TRYPTOPHAN-AMINOTRANSFERASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[TYROSINE-AMINOTRANSFERASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY-7210]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''8''' reactions found over '''8''' reactions in the full pathway
+
* [[ASPARAGINE-DEG1-PWY-1]]
−
* [[PWY-7198]]
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
* [[ASPARTATESYN-PWY]]
−
* [[PWY-7184]]
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
* [[GLUTDEG-PWY]]
−
* [[PWY-6545]]
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
* [[PWY-5913]]
−
{{#set: transcription-direction=positive}}
+
** '''10''' reactions found over '''11''' reactions in the full pathway
−
{{#set: right-end-position=341187}}
+
* [[PWY-7383]]
−
{{#set: left-end-position=336053}}
+
** '''4''' reactions found over '''7''' reactions in the full pathway
−
{{#set: centisome-position=97.48522   }}
+
* [[PWY-7117]]
 +
** '''10''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-7115]]
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[ASPARTATE-DEG1-PWY]]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[MALATE-ASPARTATE-SHUTTLE-PWY]]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[HISTSYN-PWY]]
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[ANAPHENOXI-PWY]]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PHESYN]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7432]]
 +
** '''3''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5079]]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6318]]
 +
** '''4''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6638]]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6642]]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6643]]
 +
** '''1''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5081]]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[TRPKYNCAT-PWY]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[TRPIAACAT-PWY]]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-581]]
 +
** '''5''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-3581]]
 +
** '''6''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY3O-4108]]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5048]]
 +
** '''1''' reactions found over '''10''' reactions in the full pathway
 +
* [[TYRFUMCAT-PWY]]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7514]]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5886]]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-7518]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[TYRSYN]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5754]]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5151]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
</div>
 +
{{#set: transcription-direction=negative}}
 +
{{#set: right-end-position=12972}}
 +
{{#set: left-end-position=7855}}
 +
{{#set: centisome-position=7.1134896   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=5}}
+
{{#set: nb reaction associated=10}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=32}}

Revision as of 14:24, 26 August 2019

Gene SJ04188

  • transcription-direction:
    • negative
  • right-end-position:
    • 12972
  • left-end-position:
    • 7855
  • centisome-position:
    • 7.1134896

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • ASPARAGINE-DEG1-PWY-1
    • 3 reactions found over 3 reactions in the full pathway
  • ASPARTATESYN-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • GLUTDEG-PWY
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5913
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-7383
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-7117
    • 10 reactions found over 12 reactions in the full pathway
  • PWY-7115
    • 9 reactions found over 10 reactions in the full pathway
  • ASPARTATE-DEG1-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • MALATE-ASPARTATE-SHUTTLE-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • HISTSYN-PWY
    • 10 reactions found over 10 reactions in the full pathway
  • ANAPHENOXI-PWY
    • 1 reactions found over 3 reactions in the full pathway
  • PHESYN
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7432
    • 3 reactions found over 2 reactions in the full pathway
  • PWY-5079
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-6318
    • 4 reactions found over 9 reactions in the full pathway
  • PWY-6638
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6642
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-6643
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-5081
    • 1 reactions found over 4 reactions in the full pathway
  • TRPKYNCAT-PWY
    • 1 reactions found over 2 reactions in the full pathway
  • TRPIAACAT-PWY
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-581
    • 5 reactions found over 12 reactions in the full pathway
  • PWY-3581
    • 6 reactions found over 11 reactions in the full pathway
  • PWY3O-4108
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-5048
    • 1 reactions found over 10 reactions in the full pathway
  • TYRFUMCAT-PWY
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7514
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-5886
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-7518
    • 1 reactions found over 2 reactions in the full pathway
  • TYRSYN
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-5754
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-5151
    • 1 reactions found over 2 reactions in the full pathway




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