Difference between revisions of "5-NUCLEOTID-RXN"

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(Created page with "Category:reaction == Reaction RXN-9526 == * direction: ** left-to-right * common-name: ** trans oct-2-enoyl-[acyl-carrier protein] reductase (nadph, b-specific) ** fatty a...")
(Created page with "Category:reaction == Reaction 5-NUCLEOTID-RXN == * direction: ** left-to-right * common-name: ** pyrimidine nucleotidase ** 5'-nucleotidase * ec-number: ** [http://enzyme....")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-9526 ==
+
== Reaction 5-NUCLEOTID-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** trans oct-2-enoyl-[acyl-carrier protein] reductase (nadph, b-specific)
+
** pyrimidine nucleotidase
−
** fatty acid synthase
+
** 5'-nucleotidase
−
** octanoyl-[acp] reductase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.3.1.10 ec-1.3.1.10]
+
** [http://enzyme.expasy.org/EC/3.1.3.5 ec-3.1.3.5]
−
** [http://enzyme.expasy.org/EC/1.3.1.39 ec-1.3.1.39]
 
−
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 
−
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
 
−
* synonymous:
 
−
** trans oct-2-enoyl acyl-carrier-protein reductase
 
−
** trans oct-2-enoyl-acp reductase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-Octenoyl-ACPs]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[Octanoyl-ACPs]][c]
+
* 1 [[Ribonucleoside-Monophosphates]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[Ribonucleosides]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[SJ18059]]
+
* Gene: [[SJ15366]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ00613]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ16098]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ17743]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
* Gene: [[SJ18895]]
−
* Gene: [[SJ15983]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ04769]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06617]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06944]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ10624]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ00320]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ19629]]
+
* Gene: [[SJ18402]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ03883]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ04443]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
* Gene: [[SJ09030]]
−
* Gene: [[SJ06616]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ13014]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ11672]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5994]], palmitate biosynthesis (type I fatty acid synthase):
 
−
** '''31''' reactions found over '''31''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR115623
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12485 12485]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04959 R04959]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07297 R07297]
−
* METANETX-RXN : MNXR109250
+
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P06196 P06196]
 +
** [http://www.uniprot.org/uniprot/P21588 P21588]
 +
** [http://www.uniprot.org/uniprot/O34313 O34313]
 +
** [http://www.uniprot.org/uniprot/Q9KM44 Q9KM44]
 +
** [http://www.uniprot.org/uniprot/O29385 O29385]
 +
** [http://www.uniprot.org/uniprot/P44569 P44569]
 +
** [http://www.uniprot.org/uniprot/O83142 O83142]
 +
** [http://www.uniprot.org/uniprot/P49902 P49902]
 +
** [http://www.uniprot.org/uniprot/P22848 P22848]
 +
** [http://www.uniprot.org/uniprot/Q05927 Q05927]
 +
** [http://www.uniprot.org/uniprot/P21589 P21589]
 +
** [http://www.uniprot.org/uniprot/P29240 P29240]
 +
** [http://www.uniprot.org/uniprot/P07024 P07024]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=octanoyl-[acp] reductase|trans oct-2-enoyl-[acyl-carrier protein] reductase (nadph, b-specific)|fatty acid synthase}}
+
{{#set: common-name=pyrimidine nucleotidase|5'-nucleotidase}}
−
{{#set: ec-number=ec-1.3.1.10|ec-2.3.1.85|ec-2.3.1.86|ec-1.3.1.39}}
+
{{#set: ec-number=ec-3.1.3.5}}
−
{{#set: synonymous=trans oct-2-enoyl acyl-carrier-protein reductase|trans oct-2-enoyl-acp reductase}}
+
{{#set: nb gene associated=5}}
−
{{#set: nb gene associated=15}}
+
{{#set: nb pathway associated=0}}
−
{{#set: nb pathway associated=1}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction tool=pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:22, 18 March 2021

Reaction 5-NUCLEOTID-RXN

  • direction:
    • left-to-right
  • common-name:
    • pyrimidine nucleotidase
    • 5'-nucleotidase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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